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[179207_at]

Description R06C1.6 /REP_DB=WormBase Gene ID /WP=CE18120 /TR=O62338 /GB=CAB03223.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 15      4grp_high_8_8 > 03      6grp_highest_nonorm > 80      6grp_total > 05      4grp_total > 13      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 430
1 2 3 4 range
A 294.6
(0.4)
P 		124.3
(-2.5)
A 		97.9
(-3)
P 		440
(3)
P 		342
B 238.3
(-0.5)
P 		175.4
(-1.4)
A 		61.8
(-3)
A 		491.8
(3)
P 		430
C 292.4
(0.7)
P 		128.8
(-2.6)
P 		110.6
(-3)
P 		404.4
(3)
P 		294
avr 275.1
(0.1) 		142.8
(-2.1) 		90.1
(-3) 		445.4
(3) 		355

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 253.5
(3)
P 		241.7
(2.4)
P 		133.5
(-2.8)
P 		129.4
(-3)
P 		206.4
(0.7)
P 		190.5
(-0)
P 		124
B 301.8
(3)
P 		209.4
(0.2)
P 		204.3
(0.1)
P 		226.4
(0.7)
P 		158.8
(-1.3)
P 		101.7
(-3)
P 		200
C 288.1
(3)
P 		260.7
(1.6)
P 		178.5
(-2.6)
P 		204.7
(-1.3)
P 		194.8
(-1.8)
P 		170.5
(-3)
P 		118
avr 281.1
(3) 		237.3
(0.9) 		172.1
(-2.2) 		186.8
(-1.5) 		186.7
(-1.5) 		154.2
(-3) 		127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 107.2
(3)
P 		27
(-2.9)
A 		25.6
(-3)
P 		64.4
(-0.1)
P 		82
B 76
(1.1)
P 		43.3
(-1.1)
A 		14.3
(-3)
A 		104.8
(3)
P 		91
C 96.8
(3)
P 		37
(-3)
P 		38.6
(-2.8)
P 		68.2
(0.1)
P 		60
avr 93.3
(3) 		35.8
(-2.1) 		26.2
(-3) 		79.1
(1.7) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 46.7
(-1.1)
P 		86
(3)
P 		29.1
(-3)
P 		32.8
(-2.6)
P 		62.3
(0.5)
P 		46.4
(-1.2)
P 		57
B 105
(3)
P 		69.7
(-0.2)
P 		49.6
(-2)
P 		60
(-1)
P 		64.5
(-0.6)
P 		37.9
(-3)
P 		67
C 106.8
(3)
P 		79.5
(0.5)
P 		45.4
(-2.6)
P 		41.2
(-3)
P 		63
(-1)
P 		57.1
(-1.5)
P 		66
avr 86.2
(3) 		78.4
(2) 		41.4
(-3) 		44.7
(-2.6) 		63.3
(-0.1) 		47.1
(-2.2) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179207_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1121
Sequence Type Exemplar sequence
Representative Public ID R06C1.6 NCBI
Target Description R06C1.6 /REP_DB=WormBase Gene ID /WP=CE18120 /TR=O62338 /GB=CAB03223.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060629
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000025124 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11951632:11960071:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060629 6/11 Cross Hyb Matching Probes None
SNAP00000025119 6/11 Cross Hyb Matching Probes None
R06C1.6 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11955053-11960058(+) 74.69 76.53
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03223 Hypothetical protein R06C1.6 [Caenorhabditis elegans] emb|CAD45609.2| Hypothetical protein R06C1.6 [Caenorhabditis elegans] ref|NP_493030.3| R06C1.6 [Caenorhabditis elegans] 1.0E-176
blast CAE71721 Hypothetical protein CBG18698 [Caenorhabditis briggsae] 2.0E-83
Sequence
Target Sequence 
>C. ELEGANS:179207_AT
cgccagtgtcccaagacttcaagtcaactataataaacggtcacgtcatgggagcccacc
accatcatcttccccatcacacccgcttccttcaacatcaacaaagtgctccgaaccttc
gcctcggaactcaaacccccgaggaagcgcttccttatcaaatcagcggaatcactccgc
cggcccgcccgttcgacagatctttggtcgaggaatttgagatgtgtgttcgtgcagttc
taatggcttctcatcgtgtctattgtcgacatgtctatcgtcaattaactgctgaagtct
cggagttgtatgccagagttgcgaagaatcaggtgccgaagaaagccgtcaagaagatca
ttgccgcccggcaaccggcaacgcctggagaacggatcgagttggagagacagtgtaagt
acagtggggcgcgtttgacttctgcttcttttttgaatttcccaccagccagatttcaga
ttctcgcgccaaaattcattctcagaacatcggtcgcaatcgcgctccaccgtgattttg
ttgaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCAGTGTCCCAAGACTTCAAGTC 149 257 1220 Antisense
TAAACGGTCACGTCATGGGAGCCCA 109 639 1253 Antisense
GGAAGCGCTTCCTTATCAAATCAGC 262 531 1362 Antisense
GTTCGTGCAGTTCTAATGGCTTCTC 145 443 1447 Antisense
GCTTCTCATCGTGTCTATTGTCGAC 2 307 1465 Antisense
GCCGTCAAGAAGATCATTGCCGCCC 696 283 1564 Antisense
GTAAGTACAGTGGGGCGCGTTTGAC 282 461 1634 Antisense
GTTTGACTTCTGCTTCTTTTTTGAA 591 451 1652 Antisense
CCAGCCAGATTTCAGATTCTCGCGC 567 273 1684 Antisense
TTCTCGCGCCAAAATTCATTCTCAG 531 693 1700 Antisense
CGCTCCACCGTGATTTTGTTGAACA 523 255 1742 Antisense
Sequence Source Affymetrix Proprietary Database