[Home] | [Total List]

[179206_at]

Description F58B4.3 /REP_DB=WormBase Gene ID /WP=CE06013 /TR=Q20973 /GB=CAA98495.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 18      6grp_total > 17      4grp_total > 30      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1317
1 2 3 4 range
A 1772
(3)
P 		1087
(-0.8)
P 		677
(-3)
M 		1576
(1.9)
P 		1095
B 1994.3
(3)
P 		1024.5
(-1.6)
P 		720
(-3)
P 		1751.8
(1.9)
P 		1274
C 1822.6
(3)
P 		990.6
(-1.4)
P 		680.3
(-3)
P 		1562.3
(1.6)
P 		1142
avr 1863
(3) 		1034
(-1.2) 		692.4
(-3) 		1630
(1.8) 		1171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1101
1 2 3 4 5 6 range
A 1628.8
(3)
P 		918.6
(-1.3)
P 		779.2
(-2.1)
P 		631
(-3)
A 		719.9
(-2.5)
A 		731.7
(-2.4)
P 		998
B 1677.6
(3)
P 		998.3
(-1.1)
P 		811.7
(-2.3)
P 		748.3
(-2.6)
P 		689
(-3)
M 		793.9
(-2.4)
P 		989
C 1477.7
(3)
P 		1061.7
(0.2)
P 		798.2
(-1.5)
P 		749.3
(-1.9)
P 		577
(-3)
A 		823.9
(-1.4)
P 		901
avr 1594.7
(3) 		992.9
(-0.9) 		796.4
(-2.1) 		709.5
(-2.7) 		662
(-3) 		783.2
(-2.2) 		933
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 478
1 2 3 4 range
A 645.2
(3)
P 		236
(-2.2)
P 		177
(-3)
M 		230.7
(-2.3)
P 		468
B 636
(3)
P 		253
(-1.9)
P 		166.8
(-3)
P 		373.3
(-0.4)
P 		469
C 603.3
(3)
P 		284.8
(-2.2)
P 		237.1
(-3)
P 		263.4
(-2.6)
P 		366
avr 628.2
(3) 		257.9
(-2.1) 		193.6
(-3) 		289.1
(-1.7) 		435

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 433
1 2 3 4 5 6 range
A 300.3
(2)
P 		326.7
(3)
P 		169.7
(-2.7)
P 		160
(-3)
A 		217.2
(-0.9)
A 		178.1
(-2.3)
P 		167
B 583.7
(3)
P 		332.3
(-0.9)
P 		197.1
(-3)
P 		198.2
(-3)
P 		279.9
(-1.7)
M 		296
(-1.5)
P 		387
C 547.7
(3)
P 		324
(-0.4)
P 		203.2
(-2.2)
P 		150.7
(-3)
P 		186.7
(-2.5)
A 		275.8
(-1.1)
P 		397
avr 477.2
(3) 		327.7
(0.1) 		190
(-2.6) 		169.6
(-3) 		227.9
(-1.9) 		250
(-1.4) 		308
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179206_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13692
Sequence Type Exemplar sequence
Representative Public ID F58B4.3 NCBI
Target Description F58B4.3 /REP_DB=WormBase Gene ID /WP=CE06013 /TR=Q20973 /GB=CAA98495.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073385(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073385 NCBI Caenorhabditis elegans F58B4.3 (F58B4.3) mRNA, complete cds. 11/11 None
SNAP00000017998 ENSEMBL cdna:SNAP chromosome:CEL140:V:10932399:10933136:1 11/11 None
GENEFINDER00000018005 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10932399:10933136:1 11/11 None
F58B4.3 ENSEMBL cdna:known chromosome:CEL140:V:10932399:10933364:1 gene:F58B4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10932398-10933136(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58B4.3
Entrez Gene 186495 Entrez gene
SwissProt Q20973 EMBL-EBI
WormBase CE06013 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98495 Hypothetical protein F58B4.3 [Caenorhabditis elegans] ref|NP_505786.1| F58B4.3 [Caenorhabditis elegans] 5.0E-61
blast CAE64913 Hypothetical protein CBG09733 [Caenorhabditis briggsae] 2.0E-44
blast CAE64914 Hypothetical protein CBG09734 [Caenorhabditis briggsae] 1.0E-14
Sequence
Target Sequence 
>C. ELEGANS:179206_AT
gccattgccgtttacactgcatttgctctacagtgccatgtagttccagctggaaacctc
tccgttccagatacctcccagcgtcaggagtgtggtatcggatcattgacatgcgtcaaa
gttgtcgacttcacccggggaacctataccaagcaatgccaaaccatgaactgcacattg
aacggaatgcaaaatgccgcagccaactgccagaactcttcagctttcggagtcaatggg
gccacttgctgctgctacggagatggatgtaactcttccccgaaaactggaattgtgtca
gctgttggaataactctcggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCATTGCCGTTTACACTGCATTTG 381 279 40 Antisense
ACAGTGCCATGTAGTTCCAGCTGGA 317 107 69 Antisense
AGATACCTCCCAGCGTCAGGAGTGT 346 65 108 Antisense
TGCGTCAAAGTTGTCGACTTCACCC 553 557 151 Antisense
GGGGAACCTATACCAAGCAATGCCA 177 497 176 Antisense
CAAAATGCCGCAGCCAACTGCCAGA 620 189 229 Antisense
AACTGCCAGAACTCTTCAGCTTTCG 206 139 244 Antisense
TCGGAGTCAATGGGGCCACTTGCTG 401 601 266 Antisense
CACTTGCTGCTGCTACGGAGATGGA 668 195 282 Antisense
GGAGATGGATGTAACTCTTCCCCGA 99 517 298 Antisense
GTCAGCTGTTGGAATAACTCTCGGC 132 467 336 Antisense
Sequence Source Affymetrix Proprietary Database