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[179205_at]

Description ZC21.8 /REP_DB=WormBase Gene ID /WP=CE00559 /TR=Q23251 /GB=AAA28170.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 1.1
(-3)
A 		3.4
(-2.4)
A 		26.1
(3)
A 		14.6
(0.2)
A 		25
B 26.4
(3)
A 		13.8
(-0.3)
A 		14.1
(-0.2)
A 		3.3
(-3)
A 		23
C 11.7
(-2)
A 		2.4
(-3)
A 		3.9
(-2.8)
A 		57.7
(3)
M 		55
avr 13.1
(-0.9) 		6.5
(-3) 		14.7
(-0.4) 		25.2
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 25.9
(3)
A 		2.5
(-2.8)
A 		18.7
(1.2)
A 		6.7
(-1.8)
A 		14.9
(0.3)
A 		1.8
(-3)
A 		24
B 1
(-3)
A 		5.6
(-0.8)
A 		1.1
(-3)
A 		13.3
(3)
A 		5.7
(-0.7)
A 		3.8
(-1.6)
A 		12
C 10.5
(-1)
A 		6.5
(-2.3)
A 		23.3
(3)
A 		4.2
(-3)
A 		17.5
(1.2)
A 		15.9
(0.7)
A 		19
avr 12.5
(1.8) 		4.9
(-3) 		14.4
(3) 		8.1
(-1) 		12.7
(1.9) 		7.2
(-1.5) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.4
(-3)
A 		0.7
(-2.7)
A 		6.8
(3)
A 		2.1
(-1.4)
A 		6
B 8.4
(3)
A 		3.4
(-0.9)
A 		3.3
(-1)
A 		0.7
(-3)
A 		8
C 3.9
(-0.9)
A 		0.7
(-3)
A 		1.4
(-2.5)
A 		9.7
(3)
M 		9
avr 4.2
(3) 		1.6
(-3) 		3.8
(2.1) 		4.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 4.8
(3)
A 		0.9
(-2.3)
A 		4.1
(2)
A 		1.7
(-1.2)
A 		4.5
(2.6)
A 		0.4
(-3)
A 		4
B 0.3
(-3)
A 		1.9
(-0)
A 		0.3
(-3)
A 		3.5
(3)
A 		2.3
(0.8)
A 		1.4
(-0.9)
A 		3
C 3.9
(0.6)
A 		2
(-1.6)
A 		5.9
(3)
A 		0.8
(-3)
A 		5.6
(2.6)
A 		5.3
(2.3)
A 		5
avr 3
(0.4) 		1.6
(-3) 		3.4
(1.3) 		2
(-2) 		4.1
(3) 		2.4
(-1.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179205_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7704
Sequence Type Exemplar sequence
Representative Public ID ZC21.8 NCBI
Target Description ZC21.8 /REP_DB=WormBase Gene ID /WP=CE00559 /TR=Q23251 /GB=AAA28170.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066478(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066478 NCBI Caenorhabditis elegans ZC21.8 (ZC21.8) mRNA, complete cds. 11/11 None
SNAP00000000301 ENSEMBL cdna:SNAP chromosome:CEL140:III:8518866:8519827:-1 11/11 None
GENEFINDER00000000314 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8518866:8519851:-1 11/11 None
ZC21.8 ENSEMBL cdna:known chromosome:CEL140:III:8518866:8519851:-1 gene:ZC21.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8518860-8519846(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC21.8
Entrez Gene 191055 Entrez gene
WormBase CE38667 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28170 Hypothetical protein ZC21.8 [Caenorhabditis elegans] ref|NP_498879.2| ZC21.8 [Caenorhabditis elegans] 2.0E-71
blast AAA28170 Hypothetical protein ZC21.8 [Caenorhabditis elegans] ref|NP_498879.2| ZC21.8 [Caenorhabditis elegans] 3.0E-67
blast P34592 Hypothetical protein ZC21.8 in chromosome III 1.0E-52
blast AAA28170 Hypothetical protein ZC21.8 [Caenorhabditis elegans] ref|NP_498879.2| ZC21.8 [Caenorhabditis elegans] 2.0E-51
blast P34592 Hypothetical protein ZC21.8 in chromosome III 2.0E-51
blast P34592 Hypothetical protein ZC21.8 in chromosome III 1.0E-48
blast S44875 ZC21.6 protein - Caenorhabditis elegans 1.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498879.2 1 10-32
ZC21.8 1 10-32
SNAP00000000301 1 5-24
GENEFINDER00000000314 1 10-32
Sequence
Target Sequence 
>C. ELEGANS:179205_AT
tcaagtatcttcaattcatcatcattttttgtagtggactttgcatggctttggtaattt
gtacaaaggcaaaatctggaaaaggaacgaatacagcgaaaagcagcggtggcaataatg
ggacaaatctgaatgccaaaagatctaacactactcaagatgatgtcaaattcaatttga
atatcaaaaacacggagcaaaagcgggatgagtttgatgatgacgaagagaatccactcg
caaagattccgacaaaggcaagattgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGTATCTTCAATTCATCATCAT 119 633 44 Antisense
CATCATTTTTTGTAGTGGACTTTGC 478 211 63 Antisense
GTGGACTTTGCATGGCTTTGGTAAT 704 489 77 Antisense
GAATACAGCGAAAAGCAGCGGTGGC 1 327 132 Antisense
GCAGCGGTGGCAATAATGGGACAAA 475 313 146 Antisense
AATGCCAAAAGATCTAACACTACTC 652 165 175 Antisense
CTAACACTACTCAAGATGATGTCAA 658 225 188 Antisense
AACACGGAGCAAAAGCGGGATGAGT 105 121 232 Antisense
GATGACGAAGAGAATCCACTCGCAA 463 411 262 Antisense
AATCCACTCGCAAAGATTCCGACAA 527 167 274 Antisense
AGATTCCGACAAAGGCAAGATTGCC 526 65 287 Antisense
Sequence Source Affymetrix Proprietary Database