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[179203_at]

Description F32G8.3 /REP_DB=WormBase Gene ID /WP=CE05792 /TR=Q19977 /GB=CAA96647.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      6grp_highest_nonorm > 92      6grp_total > 78      4grp_total > 02      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2204
1 2 3 4 range
A 91.3
(-2.7)
P 		26.3
(-2.9)
A 		1.2
(-3)
A 		1989
(3)
P 		1988
B 58.2
(-2.8)
P 		25.7
(-3)
A 		12
(-3)
A 		1848.1
(3)
P 		1836
C 86.8
(-2.8)
P 		32.2
(-3)
A 		30.3
(-3)
A 		2204.9
(3)
P 		2175
avr 78.8
(-2.8) 		28.1
(-3) 		14.5
(-3) 		2014
(3) 		2000

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 883
1 2 3 4 5 6 range
A 167.5
(-1.9)
P 		51.5
(-3)
P 		124.7
(-2.3)
P 		78.4
(-2.8)
P 		246.6
(-1.2)
P 		713.7
(3)
P 		662
B 151.7
(-2.5)
P 		91.4
(-2.9)
P 		114.8
(-2.8)
P 		79.8
(-3)
P 		290.1
(-1.5)
P 		934.1
(3)
P 		854
C 144.5
(-2.5)
P 		115.4
(-2.8)
P 		103.7
(-2.9)
P 		90.5
(-3)
P 		235.3
(-1.7)
P 		757.9
(3)
P 		667
avr 154.6
(-2.4) 		86.1
(-3) 		114.4
(-2.7) 		82.9
(-3) 		257.3
(-1.5) 		801.9
(3) 		719
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 394
1 2 3 4 range
A 33.3
(-2.3)
P 		5.7
(-2.9)
A 		0.3
(-3)
A 		291.1
(3)
P 		291
B 18.6
(-2.8)
P 		6.3
(-2.9)
A 		2.8
(-3)
A 		393.8
(3)
P 		391
C 28.7
(-2.7)
P 		9.2
(-3)
A 		10.6
(-3)
A 		371.8
(3)
P 		363
avr 26.9
(-2.6) 		7.1
(-3) 		4.6
(-3) 		352.2
(3) 		348

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 30.9
(-2.5)
P 		18.3
(-3)
P 		27.2
(-2.7)
P 		19.9
(-2.9)
P 		74.4
(-0.8)
P 		173.8
(3)
P 		156
B 52.8
(-2.4)
P 		30.4
(-2.8)
P 		27.9
(-2.9)
P 		21.1
(-3)
P 		117.9
(-1.2)
P 		348.3
(3)
P 		327
C 53.6
(-2.1)
P 		35.2
(-2.6)
P 		26.4
(-2.8)
P 		18.2
(-3)
P 		76.2
(-1.5)
P 		253.7
(3)
P 		236
avr 45.8
(-2.3) 		28
(-2.8) 		27.2
(-2.8) 		19.7
(-3) 		89.5
(-1.2) 		258.6
(3) 		239
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179203_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11709
Sequence Type Exemplar sequence
Representative Public ID F32G8.3 NCBI
Target Description F32G8.3 /REP_DB=WormBase Gene ID /WP=CE05792 /TR=Q19977 /GB=CAA96647.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073306(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073306 NCBI Caenorhabditis elegans F32G8.3 (F32G8.3) mRNA, complete cds. 11/11 None
SNAP00000017271 ENSEMBL cdna:SNAP chromosome:CEL140:V:10557198:10557820:-1 11/11 None
GENEFINDER00000017279 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10557101:10557820:-1 11/11 None
F32G8.3 ENSEMBL cdna:known chromosome:CEL140:V:10557198:10557820:-1 gene:F32G8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10557197-10557820(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32G8.3
Entrez Gene 179470 Entrez gene
SwissProt Q19977 EMBL-EBI
WormBase CE05792 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96647 Hypothetical protein F32G8.3 [Caenorhabditis elegans] ref|NP_505707.1| F32G8.3 [Caenorhabditis elegans] 3.0E-33
blast CAA96647 Hypothetical protein F32G8.3 [Caenorhabditis elegans] ref|NP_505707.1| F32G8.3 [Caenorhabditis elegans] 1.0E-27
blast CAE64842 Hypothetical protein CBG09638 [Caenorhabditis briggsae] 7.0E-26
blast CAE64842 Hypothetical protein CBG09638 [Caenorhabditis briggsae] 3.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505707.1 1 5-22
F32G8.3 1 5-22
SNAP00000017271 1 5-22
GENEFINDER00000017279 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:179203_AT
tacttttgttcctggtttcgattatatccggcggattaattcagagccgagtgaaacgac
aatggggaggatggggtggaggtccaggaggatggggagggggtccaggaggatggcaac
aacctggatttcaacagaaaaattggaataaaaatatgaatagaaaccatattgcagcaa
agcaagatcaatataattgtcaaacatctggaatcaacttgatcggtctcccaatcagta
gctataattgtcgaaattctggaatgtctgcaaatgtgaacgctttgcaacaaagtcatc
aaagtcaaggaatgatgcaaggacctctcgcaggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTTTTGTTCCTGGTTTCGATTAT 61 643 35 Antisense
TCCTGGTTTCGATTATATCCGGCGG 206 591 44 Antisense
ATATCCGGCGGATTAATTCAGAGCC 357 21 58 Antisense
GAGCCGAGTGAAACGACAATGGGGA 264 385 78 Antisense
GGGAGGGGGTCCAGGAGGATGGCAA 604 493 129 Antisense
GGATGGCAACAACCTGGATTTCAAC 285 515 145 Antisense
TGGAATCAACTTGATCGGTCTCCCA 192 547 243 Antisense
CGGTCTCCCAATCAGTAGCTATAAT 101 245 258 Antisense
GAATGTCTGCAAATGTGAACGCTTT 591 331 296 Antisense
GTGAACGCTTTGCAACAAAGTCATC 51 481 310 Antisense
ATGATGCAAGGACCTCTCGCAGGAT 206 47 346 Antisense
Sequence Source Affymetrix Proprietary Database