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[179202_at]

Description T02E9.5 /REP_DB=WormBase Gene ID /WP=CE23941 /TR=Q9U382 /GB=CAB54299.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 20      6grp_total > 07      4grp_total > 45      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1565
1 2 3 4 range
A 1037.6
(3)
P 		842.1
(-0.5)
P 		758.8
(-2)
P 		706
(-3)
P 		332
B 2056.4
(3)
P 		1279.7
(0)
P 		622.5
(-2.5)
P 		491.4
(-3)
P 		1565
C 1889.5
(3)
P 		1082.2
(-0.8)
P 		818.6
(-2.1)
P 		624.3
(-3)
P 		1265
avr 1661.2
(3) 		1068
(-0.4) 		733.3
(-2.3) 		607.2
(-3) 		1054

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2397
1 2 3 4 5 6 range
A 2524
(3)
P 		1318.1
(-0.3)
P 		1406.3
(-0.1)
P 		449.1
(-2.7)
P 		333.4
(-3)
P 		395
(-2.8)
P 		2191
B 2639.4
(3)
P 		1466.3
(-0.1)
P 		831
(-1.8)
P 		562.5
(-2.5)
P 		368.8
(-3)
P 		892.9
(-1.6)
P 		2271
C 1649.5
(3)
P 		1070.6
(0.5)
P 		645.9
(-1.3)
P 		637.9
(-1.3)
P 		242.8
(-3)
P 		542.6
(-1.7)
P 		1407
avr 2271
(3) 		1285
(-0) 		961.1
(-1) 		549.8
(-2.3) 		315
(-3) 		610.2
(-2.1) 		1956
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 553
1 2 3 4 range
A 377.8
(3)
P 		182.8
(-1.3)
P 		198.4
(-0.9)
P 		103.3
(-3)
P 		275
B 655.8
(3)
P 		316
(-0.7)
P 		144.2
(-2.6)
P 		104.7
(-3)
P 		551
C 625.5
(3)
P 		311.1
(-0.6)
P 		285.3
(-0.9)
P 		105.3
(-3)
P 		520
avr 553
(3) 		270
(-0.8) 		209.3
(-1.6) 		104.4
(-3) 		449

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 840
1 2 3 4 5 6 range
A 465.3
(2.9)
P 		468.8
(3)
P 		306.3
(0.4)
P 		113.9
(-2.7)
P 		100.6
(-2.9)
P 		96.2
(-3)
P 		373
B 918.4
(3)
P 		488.1
(-0.4)
P 		201.8
(-2.6)
P 		149
(-3)
P 		149.8
(-3)
P 		332.9
(-1.6)
P 		769
C 611.4
(3)
P 		326.7
(-0.2)
P 		164.4
(-2)
P 		128.3
(-2.4)
P 		78.6
(-3)
P 		181.6
(-1.8)
P 		533
avr 665
(3) 		427.9
(0.4) 		224.2
(-1.8) 		130.4
(-2.8) 		109.7
(-3) 		203.6
(-2) 		555
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179202_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14484
Sequence Type Exemplar sequence
Representative Public ID T02E9.5 NCBI
Target Description T02E9.5 /REP_DB=WormBase Gene ID /WP=CE23941 /TR=Q9U382 /GB=CAB54299.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073480(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073480 NCBI Caenorhabditis elegans T02E9.5 (T02E9.5) mRNA, complete cds. 10/11 None
T02E9.5.2 ENSEMBL cdna:known chromosome:CEL140:V:11344677:11346612:1 gene:T02E9.5 10/11 None
T02E9.5.1 ENSEMBL cdna:known chromosome:CEL140:V:11344677:11347323:1 gene:T02E9.5 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026338 8/11 Cross Hyb Matching Probes None
GENEFINDER00000026343 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11344676-11345429(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02E9.5
Entrez Gene 179568 Entrez gene
SwissProt Q9U382 EMBL-EBI
WormBase CE31981 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54299 Hypothetical protein T02E9.5 [Caenorhabditis elegans] ref|NP_505881.2| T02E9.5 [Caenorhabditis elegans] 1.0E-94
blast CAE75225 Hypothetical protein CBG23175 [Caenorhabditis briggsae] 7.0E-60
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505881.2 3 10-32,57-74,169-187
T02E9.5.2 3 10-32,57-74,169-187
T02E9.5.1 3 10-32,57-74,169-187
Sequence
Target Sequence 
>C. ELEGANS:179202_AT
atgcatgcggagggctcttcgtataattacatttcctttggtccttcttctttttctttt
ttcttttttactctggctactcttctttttgctctcaattggaataaccaatgctataaa
tatatttttgtttttttattgcaggctttcatatatcacaaaatgaattcctggatcgtt
tatgcaattgcaatccttgctgtatttgtctctgcacaatccgacgaagattgggatgca
acagtccgagacaagacggagttctgtggaaccatggctcagtatgcaccaaccggagat
atctactgctcacaatttgcaatgtgctgtgatcagcaattcgatccaaacaacggagat
aaatgcaaagtaaaagaatctgaatgtcaaccaactgatgatggacgcagtggattggga
acttgcaaatactccaactgcacagaacttatcacaacaaccacaaccacaacgacccca
gctcctcaatatgaatcaatcaatgcagcttaccaaggttcgttgtcacggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCATGCGGAGGGCTCTTCGTATA 265 43 13 Antisense
TAATTACATTTCCTTTGGTCCTTCT 369 635 36 Antisense
ACTCTTCTTTTTGCTCTCAATTGGA 220 101 91 Antisense
TTCCTGGATCGTTTATGCAATTGCA 172 699 180 Antisense
CAATCCTTGCTGTATTTGTCTCTGC 160 183 203 Antisense
TTGTCTCTGCACAATCCGACGAAGA 654 705 218 Antisense
GAACCATGGCTCAGTATGCACCAAC 670 345 281 Antisense
ATGCACCAACCGGAGATATCTACTG 633 41 296 Antisense
GGGAACTTGCAAATACTCCAACTGC 422 493 429 Antisense
ACCCCAGCTCCTCAATATGAATCAA 609 89 487 Antisense
GCTTACCAAGGTTCGTTGTCACGGC 347 305 520 Antisense
Sequence Source Affymetrix Proprietary Database