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[179201_at]

Description F57A8.2 /REP_DB=WormBase Gene ID /WP=CE05983 /TR=Q20913 /GB=CAA94831.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 08      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 73      6grp_total > 09      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 477.6
(-0.9)
P 		430.5
(-2)
P 		387.7
(-3)
P 		645.5
(3)
P 		258
B 541.6
(1.5)
P 		386
(-3)
P 		426.7
(-1.8)
P 		594.7
(3)
P 		209
C 431.1
(-3)
P 		491.1
(-0.6)
P 		569.4
(2.5)
P 		581.6
(3)
P 		151
avr 483.4
(-1.3) 		435.9
(-3) 		461.3
(-2.1) 		607.3
(3) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 548.2
(1.3)
P 		401.5
(-2.8)
P 		512
(0.3)
P 		447.3
(-1.5)
P 		609.6
(3)
P 		393.5
(-3)
P 		216
B 674.8
(3)
P 		436
(-3)
P 		514.2
(-1)
P 		642.4
(2.2)
P 		554.6
(-0)
P 		468.8
(-2.2)
P 		239
C 499.6
(1)
P 		481
(0.3)
P 		424.5
(-1.8)
P 		554.6
(3)
P 		392.6
(-3)
P 		478
(0.2)
P 		162
avr 574.2
(3) 		439.5
(-3) 		483.6
(-1) 		548.1
(1.8) 		518.9
(0.5) 		446.8
(-2.7) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 173.9
(3)
P 		93.4
(-3)
P 		101.4
(-2.4)
P 		94.5
(-2.9)
P 		81
B 172.7
(3)
P 		95.3
(-3)
P 		98.9
(-2.7)
P 		126.7
(-0.6)
P 		77
C 142.7
(-0.3)
P 		141.2
(-0.4)
P 		198.5
(3)
P 		98.1
(-3)
P 		100
avr 163.1
(3) 		110
(-2.6) 		132.9
(-0.2) 		106.4
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 101.1
(-2.6)
P 		142.8
(0.2)
P 		111.5
(-1.9)
P 		113.5
(-1.8)
P 		184
(3)
P 		95.8
(-3)
P 		88
B 234.8
(3)
P 		145.1
(-1.9)
P 		124.9
(-3)
P 		170.2
(-0.5)
P 		225.3
(2.5)
P 		174.8
(-0.3)
P 		110
C 185.2
(3)
P 		146.8
(0)
P 		108
(-3)
P 		111.5
(-2.7)
P 		127
(-1.5)
P 		160
(1)
P 		77
avr 173.7
(2.5) 		144.9
(-0.2) 		114.8
(-3) 		131.7
(-1.4) 		178.8
(3) 		143.5
(-0.3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179201_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11331
Sequence Type Exemplar sequence
Representative Public ID F57A8.2 NCBI
Target Description F57A8.2 /REP_DB=WormBase Gene ID /WP=CE05983 /TR=Q20913 /GB=CAA94831.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073181(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073181 NCBI Caenorhabditis elegans F57A8.2 (F57A8.2) mRNA, complete cds. 11/11 None
SNAP00000034035 ENSEMBL cdna:SNAP chromosome:CEL140:V:10056508:10057489:-1 11/11 None
GENEFINDER00000034047 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10056390:10057489:-1 11/11 None
F57A8.2 ENSEMBL cdna:known chromosome:CEL140:V:10052639:10057495:-1 gene:F57A8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10056507-10057489(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57A8.2
Entrez Gene 179400 Entrez gene
SwissProt Q20913 EMBL-EBI
WormBase CE31547 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585529_AT similar to Yip1 interacting factor homolog cfa
CANINE_2:CFA.12194.1.A1_S_AT similar to Yip1 interacting factor homolog cfa
HU35KSUBA:RC_AA128902_AT Yip1 interacting factor homolog A (S. cerevisiae) hs
HU35KSUBD:RC_H61738_S_AT Yip1 interacting factor homolog A (S. cerevisiae) hs
HUGENEFL:S83365_AT Yip1 interacting factor homolog A (S. cerevisiae) hs
HG-U133A:202418_AT Yip1 interacting factor homolog A (S. cerevisiae) hs
HG-U133_PLUS_2:202418_AT Yip1 interacting factor homolog A (S. cerevisiae) hs
HG-FOCUS:202418_AT Yip1 interacting factor homolog A (S. cerevisiae) hs
HG-U133A_2:202418_AT Yip1 interacting factor homolog A (S. cerevisiae) hs
U133_X3P:G9994168_3P_AT Yip1 interacting factor homolog A (S. cerevisiae) hs
HG-U95AV2:35326_AT Yip1 interacting factor homolog A (S. cerevisiae) hs
MG-U74AV2:99675_AT Yip1 interacting factor homolog A (S. cerevisiae) mm
MOE430A:1423940_AT Yip1 interacting factor homolog A (S. cerevisiae) mm
MOUSE430A_2:1423940_AT Yip1 interacting factor homolog A (S. cerevisiae) mm
MOUSE430_2:1423940_AT Yip1 interacting factor homolog A (S. cerevisiae) mm
MOE430A:1456134_X_AT Yip1 interacting factor homolog A (S. cerevisiae) mm
MOUSE430A_2:1456134_X_AT Yip1 interacting factor homolog A (S. cerevisiae) mm
MOUSE430_2:1456134_X_AT Yip1 interacting factor homolog A (S. cerevisiae) mm
MOE430A:1423939_A_AT Yip1 interacting factor homolog A (S. cerevisiae) mm
MOUSE430A_2:1423939_A_AT Yip1 interacting factor homolog A (S. cerevisiae) mm
MOUSE430_2:1423939_A_AT Yip1 interacting factor homolog A (S. cerevisiae) mm
MU19KSUBB:TC26622_AT Yip1 interacting factor homolog A (S. cerevisiae), mRNA (cDNA clone MGC:18791 IMAGE:4190535) mm
RG-U34A:U96490_G_AT Yip1 interacting factor homolog (S. cerevisiae) rn
RG-U34A:U96490_AT Yip1 interacting factor homolog (S. cerevisiae) rn
RG-U34B:RC_AA943579_AT Yip1 interacting factor homolog (S. cerevisiae) rn
RAE230A:1370305_AT Yip1 interacting factor homolog (S. cerevisiae) rn
RAT230_2:1370305_AT Yip1 interacting factor homolog (S. cerevisiae) rn
YEAST_2:1770791_AT Integral membrane protein required for the fusion of ER-derived COPII transport vesicles with the Golgi; interacts with Yip1p and Yos1p; localizes to the Golgi, the ER, and COPII vesicles Sc
Protein Similarities
Method ID Description E-Value
blast CAA94831 Hypothetical protein F57A8.2 [Caenorhabditis elegans] ref|NP_505582.2| F57A8.2 [Caenorhabditis elegans] 1.0E-158
blast CAE61042 Hypothetical protein CBG04787 [Caenorhabditis briggsae] 1.0E-134
blast CAA94831 Hypothetical protein F57A8.2 [Caenorhabditis elegans] ref|NP_505582.2| F57A8.2 [Caenorhabditis elegans] 2.0E-99
blast CAA94831 Hypothetical protein F57A8.2 [Caenorhabditis elegans] ref|NP_505582.2| F57A8.2 [Caenorhabditis elegans] 5.0E-97
blast CAE61042 Hypothetical protein CBG04787 [Caenorhabditis briggsae] 4.0E-92
blast CAE61042 Hypothetical protein CBG04787 [Caenorhabditis briggsae] 3.0E-91
blast XP_784912 PREDICTED: similar to Yip1 interacting factor homolog B isoform a [Strongylocentrotus purpuratus] 3.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR005578 EMBL-EBI Hrf1 family 6.5E-66
Pfam IPR005578 EMBL-EBI Hrf1 family 1.5E-50
Pfam IPR005578 EMBL-EBI Hrf1 family 1.5E-50
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505582.2 6 129-151,176-195,204-226,236-258,265-287,307-326
F57A8.2 6 129-151,176-195,204-226,236-258,265-287,307-326
SNAP00000034035 2 176-194,204-226
GENEFINDER00000034047 2 178-196,206-228
Sequence
Target Sequence 
>C. ELEGANS:179201_AT
atcaaggcttcgacgggtatggacagcaaagtcctacacagaatcaatacggaggatacg
ggcaacagcagcaacaacaacaaagttatgggcaaaataatggttttggaggcttccagc
cacagcaattaatgtcggatcctatgttaaatgcagcaaaacaatttggaggtcaatttg
cagagcaacaaaaggagaagctcacgaagtaccttggaacattcaatttgaagtattatt
ttgctgtcgataacgcatacgtcggaaaaaagcttggaatactcttctttccattctttc
ataaagattggtcattgaagtttgctggatcagcagacccagctccagcaagagaagacg
ttaatgctcctgacttgtacattccactgatgtcattcctcacatacattttggtttctg
gatttgtgttgggaacacaaggacgattttctcctgaaattctgggcatccttacctcga
acgcattaatttgggtaatcctggagaatattgtaattttcatctcgaaatacatactca
atatttctcaatcactgtcagtgtggcactcgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAAGGCTTCGACGGGTATGGACA 60 27 164 Antisense
GGAGGATACGGGCAACAGCAGCAAC 478 515 214 Antisense
TTTGGAGGCTTCCAGCCACAGCAAT 305 667 268 Antisense
GAAGCTCACGAAGTACCTTGGAACA 180 343 360 Antisense
TGCTGTCGATAACGCATACGTCGGA 407 583 405 Antisense
TGCTGGATCAGCAGACCCAGCTCCA 259 583 486 Antisense
GACGTTAATGCTCCTGACTTGTACA 223 379 520 Antisense
ATTCCACTGATGTCATTCCTCACAT 501 7 544 Antisense
TTCTCCTGAAATTCTGGGCATCCTT 2 693 612 Antisense
CATCCTTACCTCGAACGCATTAATT 630 209 630 Antisense
ATCACTGTCAGTGTGGCACTCGTTG 490 27 714 Antisense
Sequence Source Affymetrix Proprietary Database