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[179199_at]

Description T09F5.1 /REP_DB=WormBase Gene ID /WP=CE13521 /TR=O62375 /GB=CAB05807.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 71      6grp_highest_nonorm > 71      6grp_total > 71      4grp_total > 49      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 28.3
(-3)
A 		195.5
(3)
P 		179.6
(2.4)
P 		60.6
(-1.8)
A 		167
B 22.2
(-3)
A 		190.8
(3)
P 		143
(1.3)
P 		60.7
(-1.6)
A 		169
C 39
(-3)
A 		171
(3)
P 		151.5
(2.1)
P 		73.2
(-1.4)
P 		132
avr 29.8
(-3) 		185.8
(3) 		158
(1.9) 		64.8
(-1.7) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 585
1 2 3 4 5 6 range
A 116.2
(-3)
P 		305.4
(-0.9)
P 		473
(0.9)
P 		658.5
(3)
P 		379.3
(-0.1)
P 		127.7
(-2.9)
P 		542
B 113.4
(-3)
P 		410.7
(0.3)
P 		287
(-1.1)
P 		653.9
(3)
P 		369.4
(-0.2)
P 		115.2
(-3)
P 		541
C 109
(-3)
P 		392.5
(-0.1)
P 		329.5
(-0.7)
P 		693.7
(3)
P 		320.5
(-0.8)
P 		111.8
(-3)
P 		585
avr 112.9
(-3) 		369.5
(-0.2) 		363.2
(-0.3) 		668.7
(3) 		356.4
(-0.4) 		118.2
(-2.9) 		556
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 10.3
(-2.8)
A 		42.4
(2.3)
P 		46.9
(3)
P 		8.9
(-3)
A 		38
B 7.1
(-3)
A 		47.1
(3)
P 		33.1
(0.9)
P 		12.9
(-2.1)
A 		40
C 12.9
(-2.9)
A 		49.2
(2.5)
P 		52.8
(3)
P 		12.3
(-3)
P 		41
avr 10.1
(-3) 		46.2
(3) 		44.3
(2.7) 		11.4
(-2.8) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 21.4
(-3)
P 		108.6
(0.6)
P 		103
(0.4)
P 		167
(3)
P 		114.5
(0.8)
P 		31.1
(-2.6)
P 		146
B 39.4
(-3)
P 		136.7
(1.4)
P 		69.7
(-1.6)
P 		173.2
(3)
P 		150.1
(2)
P 		42.9
(-2.8)
P 		134
C 40.4
(-2.8)
P 		119.8
(1.8)
P 		83.9
(-0.3)
P 		139.5
(3)
P 		103.7
(0.9)
P 		37.4
(-3)
P 		102
avr 33.7
(-3) 		121.7
(1.2) 		85.5
(-0.5) 		159.9
(3) 		122.8
(1.2) 		37.1
(-2.8) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179199_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13486
Sequence Type Exemplar sequence
Representative Public ID T09F5.1 NCBI
Target Description T09F5.1 /REP_DB=WormBase Gene ID /WP=CE13521 /TR=O62375 /GB=CAB05807.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074336(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074336 NCBI Caenorhabditis elegans T09F5.1 (T09F5.1) mRNA, complete cds. 11/11 None
GENEFINDER00000036454 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15151744:15153256:1 11/11 None
T09F5.1 ENSEMBL cdna:known chromosome:CEL140:V:15151744:15153256:1 gene:T09F5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036433 4/11 Cross Hyb Matching Probes None
SNAP00000036434 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15151743-15153256(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09F5.1
Entrez Gene 188341 Entrez gene
SwissProt O62375 EMBL-EBI
WormBase CE13521 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8378 galactosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05807 Hypothetical protein T09F5.1 [Caenorhabditis elegans] ref|NP_506737.1| T09F5.1 [Caenorhabditis elegans] 0.0
blast CAB05807 Hypothetical protein T09F5.1 [Caenorhabditis elegans] ref|NP_506737.1| T09F5.1 [Caenorhabditis elegans] 1.0E-176
blast CAB04109 Hypothetical protein F14B6.6a [Caenorhabditis elegans] ref|NP_001021108.1| F14B6.6a [Caenorhabditis elegans] 2.0E-89
blast CAB04109 Hypothetical protein F14B6.6a [Caenorhabditis elegans] ref|NP_001021108.1| F14B6.6a [Caenorhabditis elegans] 1.0E-83
blast CAB03537 Hypothetical protein T09E11.10 [Caenorhabditis elegans] ref|NP_493124.1| T09E11.10 [Caenorhabditis elegans] 2.0E-76
blast CAB03537 Hypothetical protein T09E11.10 [Caenorhabditis elegans] ref|NP_493124.1| T09E11.10 [Caenorhabditis elegans] 4.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 2.0E-103
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 2.0E-103
Sequence
Target Sequence 
>C. ELEGANS:179199_AT
caattcttctctacgctgtatcaaaagtgccatctgctcaactaattggaagagtggatg
gcgacgttctgttctttccaaatttgttccagtcatttcttgataaagataattacttta
tcaacacgaataactccagtatttatggatatattgctgaagaagggaaaccaactacgt
cgaaatgttgtaaatcacgtaactttttgttccctttcaaatgttcaaattacctttcgt
ttctttctggaccattcttcctgttaacacgtcctgcggctgaaaaattattgaacgcgt
ctaaacacagggattttcaccagattgacgaccaacttatcactggacaaatggctgatg
atgctggtgttaaaagaataaatcttccaatgatacatatgtttcctgagccaacaaatg
atttcgtttttgcgtggcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTCTTCTCTACGCTGTATCAAA 67 181 485 Antisense
AAAAGTGCCATCTGCTCAACTAATT 76 131 507 Antisense
AAGAGTGGATGGCGACGTTCTGTTC 298 155 534 Antisense
TGTTCTTTCCAAATTTGTTCCAGTC 603 561 554 Antisense
TCAAATTACCTTTCGTTTCTTTCTG 541 623 709 Antisense
CTTTCTGGACCATTCTTCCTGTTAA 462 221 727 Antisense
TGTTAACACGTCCTGCGGCTGAAAA 13 559 746 Antisense
GGGATTTTCACCAGATTGACGACCA 472 495 794 Antisense
TGACGACCAACTTATCACTGGACAA 459 569 810 Antisense
TGATACATATGTTTCCTGAGCCAAC 326 565 875 Antisense
AATGATTTCGTTTTTGCGTGGCACA 240 165 901 Antisense
Sequence Source Affymetrix Proprietary Database