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[179198_at]

Description F25H9.4 /REP_DB=WormBase Gene ID /WP=CE09661 /TR=P90846 /GB=CAB02991.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 51      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 81      6grp_total > 30      4grp_total > 14      6grp_highest_sub > 03      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 284.4
(2)
P 		237
(-0.2)
P 		178.2
(-3)
P 		306.3
(3)
P 		128
B 287.7
(3)
P 		187.7
(-3)
P 		210.4
(-1.6)
P 		262.2
(1.5)
P 		100
C 318.2
(1.1)
P 		160.6
(-3)
P 		193.2
(-2.2)
P 		391.5
(3)
P 		231
avr 296.8
(1.9) 		195.1
(-2.9) 		193.9
(-3) 		320
(3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 227.9
(-1.6)
P 		275
(-0.1)
P 		371.3
(3)
P 		330.4
(1.7)
P 		208.8
(-2.2)
P 		185.1
(-3)
P 		186
B 253.2
(-1.2)
P 		290.1
(0)
P 		380.6
(3)
P 		251.1
(-1.2)
P 		197.5
(-3)
P 		200.2
(-2.9)
P 		183
C 230.3
(-2.3)
P 		329.7
(2.4)
P 		246
(-1.6)
P 		343.4
(3)
P 		215.5
(-3)
P 		235.4
(-2.1)
P 		128
avr 237.1
(-1.6) 		298.3
(1.4) 		332.6
(3) 		308.3
(1.8) 		207.3
(-3) 		206.9
(-3) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 103.5
(3)
P 		51.4
(-2.3)
P 		46.6
(-2.8)
P 		44.8
(-3)
P 		59
B 91.8
(3)
P 		46.4
(-3)
P 		48.8
(-2.7)
P 		55.9
(-1.7)
P 		45
C 105.3
(3)
P 		46.2
(-3)
P 		67.3
(-0.9)
P 		66
(-1)
P 		59
avr 100.2
(3) 		48
(-3) 		54.2
(-2.3) 		55.6
(-2.1) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 42
(-3)
P 		97.8
(3)
P 		80.9
(1.2)
P 		83.8
(1.5)
P 		63
(-0.7)
P 		45.1
(-2.7)
P 		56
B 88.1
(1.3)
P 		96.6
(3)
P 		92.4
(2.2)
P 		66.5
(-3)
P 		80.2
(-0.3)
P 		74.6
(-1.4)
P 		30
C 85.4
(0.6)
P 		100.6
(3)
P 		62.6
(-3)
P 		69
(-2)
P 		69.7
(-1.9)
P 		78.8
(-0.4)
P 		38
avr 71.8
(-2) 		98.3
(3) 		78.6
(-0.7) 		73.1
(-1.7) 		71
(-2.1) 		66.2
(-3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179198_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14458
Sequence Type Exemplar sequence
Representative Public ID F25H9.4 NCBI
Target Description F25H9.4 /REP_DB=WormBase Gene ID /WP=CE09661 /TR=P90846 /GB=CAB02991.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073938(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073938 NCBI Caenorhabditis elegans F25H9.4 (F25H9.4) mRNA, complete cds. 11/11 None
SNAP00000006464 ENSEMBL cdna:SNAP chromosome:CEL140:V:13462201:13464186:1 11/11 None
GENEFINDER00000006471 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13462093:13469536:1 11/11 None
F25H9.4 ENSEMBL cdna:known chromosome:CEL140:V:13462093:13464335:1 gene:F25H9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13462092-13464186(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-39
Ensembl F25H9.4
Entrez Gene 179827 Entrez gene
SwissProt P90846 EMBL-EBI
WormBase CE09661 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02991 Hypothetical protein F25H9.4 [Caenorhabditis elegans] ref|NP_506339.1| F25H9.4 [Caenorhabditis elegans] 0.0
blast CAB02995 Hypothetical protein F25H9.5 [Caenorhabditis elegans] ref|NP_506340.1| FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-10) [Caenorhabditis elegans] 0.0
blast CAE62584 Hypothetical protein CBG06698 [Caenorhabditis briggsae] 1.0E-156
blast CAE62585 Hypothetical protein CBG06699 [Caenorhabditis briggsae] 1.0E-119
blast CAE62585 Hypothetical protein CBG06699 [Caenorhabditis briggsae] 1.0E-117
blast CAE59356 Hypothetical protein CBG02705 [Caenorhabditis briggsae] 3.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 9.6E-22
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.5E-6
Pfam IPR002083 EMBL-EBI MATH 9.6E-22
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.5E-6
Sequence
Target Sequence 
>C. ELEGANS:179198_AT
gccgatggggagcttatcactgatggaaaaactgtcaaagtctgtcttgctcttcttgct
gataactcaccaattctctacaatcttttctacgtcgaaaaacctggacagacaactttt
catatttttgatttcacctatgaagcaattcttggaatggtttcgattcttcagttggac
tcattcgaagtttccgtatacaactacagggaccttctcgaactcggacagcgttatcaa
attccttcagtcactgataagtgtgaggaatttctgttaaaaacgcgatacgtgtcaatt
gaaacaaagctgaagctgtcggaaatcttcgagttacactacttacagttccgaactttg
gaacgtgtgacctgcattcaccatattgacaatattcttgatgaccatatggacatcgga
gaaaaaacctacgatgccctactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGATGGGGAGCTTATCACTGATG 152 285 610 Antisense
ACTGTCAAAGTCTGTCTTGCTCTTC 431 97 640 Antisense
CTGATAACTCACCAATTCTCTACAA 242 239 668 Antisense
TTCTCTACAATCTTTTCTACGTCGA 261 693 683 Antisense
TGGTTTCGATTCTTCAGTTGGACTC 408 551 767 Antisense
AGTTGGACTCATTCGAAGTTTCCGT 299 63 782 Antisense
CAACTACAGGGACCTTCTCGAACTC 174 175 810 Antisense
GACAGCGTTATCAAATTCCTTCAGT 133 369 836 Antisense
GTTACACTACTTACAGTTCCGAACT 575 445 942 Antisense
TGGAACGTGTGACCTGCATTCACCA 566 547 968 Antisense
AGAAAAAACCTACGATGCCCTACTG 329 71 1029 Antisense
Sequence Source Affymetrix Proprietary Database