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[179197_s_at]

Description C18D4.2 /REP_DB=WormBase Gene ID /WP=CE15632 /TR=O45260 /GB=CAB03900.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 24      6grp_total > 25      4grp_total > 39      6grp_high1_sub > 02      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 185
(3)
P 		41.2
(-3)
A 		54.2
(-2.5)
A 		101.3
(-0.5)
P 		144
B 191.2
(3)
P 		79.4
(-1.4)
A 		39.7
(-3)
M 		63.3
(-2.1)
P 		152
C 223.2
(3)
P 		43.2
(-3)
A 		52.2
(-2.7)
A 		96.5
(-1.2)
P 		180
avr 199.8
(3) 		54.6
(-2.8) 		48.7
(-3) 		87
(-1.5) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 130.2
(3)
P 		115.8
(1.8)
P 		120.7
(2.2)
P 		91.8
(-0.1)
P 		88.1
(-0.4)
P 		55.6
(-3)
A 		75
B 150.4
(3)
P 		135.3
(2)
P 		56.1
(-3)
P 		60.9
(-2.7)
P 		58.1
(-2.9)
P 		60.4
(-2.7)
P 		94
C 110.8
(-0.4)
P 		197.5
(3)
P 		100.7
(-0.8)
P 		82.3
(-1.5)
P 		43.3
(-3)
A 		70.5
(-1.9)
P 		154
avr 130.5
(1.7) 		149.5
(3) 		92.5
(-0.9) 		78.3
(-1.9) 		63.2
(-2.9) 		62.2
(-3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 67.4
(3)
P 		8.9
(-3)
A 		14.2
(-2.5)
A 		14.8
(-2.4)
P 		59
B 61
(3)
P 		19.6
(-1.8)
A 		9.2
(-3)
M 		13.5
(-2.5)
P 		52
C 73.9
(3)
P 		12.4
(-3)
A 		18.2
(-2.4)
A 		16.3
(-2.6)
P 		62
avr 67.4
(3) 		13.6
(-3) 		13.9
(-3) 		14.9
(-2.9) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 24
(-0.7)
P 		41.2
(3)
P 		26.3
(-0.2)
P 		23.3
(-0.9)
P 		26.6
(-0.2)
P 		13.5
(-3)
A 		28
B 52.3
(3)
P 		45
(1.9)
P 		13.6
(-3)
P 		16.1
(-2.6)
P 		23.6
(-1.4)
P 		22.5
(-1.6)
P 		39
C 41.1
(0.5)
P 		60.3
(3)
P 		25.6
(-1.5)
P 		16.5
(-2.7)
P 		14
(-3)
A 		23.6
(-1.8)
P 		46
avr 39.1
(1.1) 		48.8
(3) 		21.8
(-2.4) 		18.6
(-3) 		21.4
(-2.4) 		19.9
(-2.7) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179197_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14102
Sequence Type Exemplar sequence
Representative Public ID C18D4.2 NCBI
Target Description C18D4.2 /REP_DB=WormBase Gene ID /WP=CE15632 /TR=O45260 /GB=CAB03900.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075037(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075037 NCBI Caenorhabditis elegans C18D4.2 (C18D4.2) mRNA, complete cds. 11/11 None
SNAP00000019849 ENSEMBL cdna:SNAP chromosome:CEL140:V:17524220:17530039:1 10/11 None
GENEFINDER00000019857 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17524475:17530039:1 11/11 None
C18D4.2.1 ENSEMBL cdna:known chromosome:CEL140:V:17527908:17530055:1 gene:C18D4.2 11/11 None
C18D4.2.2 ENSEMBL cdna:known chromosome:CEL140:V:17528335:17530039:1 gene:C18D4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17528579-17530039(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18D4.2
Entrez Gene 3565166 Entrez gene
SwissProt O45260 EMBL-EBI
WormBase CE15632 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03900 Hypothetical protein C18D4.2 [Caenorhabditis elegans] ref|NP_507438.1| C18D4.2 [Caenorhabditis elegans] 0.0
blast CAB04562 Hypothetical protein C18D4.1 [Caenorhabditis elegans] emb|CAB03907.1| Hypothetical protein C18D4.1 [Caenorhabditis elegans] ref|NP_507437.1| C18D4.1 [Caenorhabditis elegans] 0.0
blast CAB04362 Hypothetical protein F40D4.12 [Caenorhabditis elegans] ref|NP_507340.1| F40D4.12 [Caenorhabditis elegans] 6.0E-97
blast CAB04362 Hypothetical protein F40D4.12 [Caenorhabditis elegans] ref|NP_507340.1| F40D4.12 [Caenorhabditis elegans] 1.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.7E-29
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.0E-18
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0012
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 9.9
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 1.1
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 1.1
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.7E-29
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0012
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 9.9
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 1.1
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 1.1
Sequence
Target Sequence 
>C. ELEGANS:179197_S_AT
gacatcttgagctcagttggtcatacaattcctgtcgaagcgttgtacatgcaagcctgt
aatcaaaatacagtgttgcgtgttctgcggcatttggattcacgtttgttgaaaacgata
tccataaaaattgtcgaagatgatcaagacaaaccatgtaactgggttttgccattggaa
attaatgagatttgcgaattggatcaatggaagttcgcggaaaacattgaagtagaacac
ttaattgacacggatgacgtgaggcattttggacacttttccgaagctaatttgaaatta
accagactcacaatggaaggaattttgagtttaaaaattacatttcttcgctcgcacaac
ttcataaaattcaaggcatcattcgaaaccagcgatataaatgtaaatatctttagagaa
acgttgctgggactggcacatctaagacctcttgatccaaataagccgaccgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATCTTGAGCTCAGTTGGTCATA 70 371 652 Antisense
GGTCATACAATTCCTGTCGAAGCGT 631 501 670 Antisense
CGAAGCGTTGTACATGCAAGCCTGT 607 253 687 Antisense
AATACAGTGTTGCGTGTTCTGCGGC 121 173 718 Antisense
GTTCTGCGGCATTTGGATTCACGTT 267 443 733 Antisense
GTGAGGCATTTTGGACACTTTTCCG 311 483 910 Antisense
TTCTTCGCTCGCACAACTTCATAAA 699 689 995 Antisense
TTCAAGGCATCATTCGAAACCAGCG 401 683 1021 Antisense
GAAACGTTGCTGGGACTGGCACATC 366 357 1069 Antisense
GGCACATCTAAGACCTCTTGATCCA 398 535 1086 Antisense
CTTGATCCAAATAAGCCGACCGTTT 296 211 1102 Antisense
Sequence Source Affymetrix Proprietary Database