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[179196_at]

Description F25C8.2 /REP_DB=WormBase Gene ID /WP=CE18635 /TR=Q9XV67 /GB=CAB04171.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 72      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 91      6grp_total > 73      4grp_total > 59      6grp_highest_sub > 03_04      6grp_cgc > 75      6grp_high1_sub > 04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 110.7
(-3)
P 		122.3
(3)
P 		119.6
(1.6)
P 		112.1
(-2.3)
P 		12
B 144.6
(1.5)
P 		147.8
(1.8)
P 		160.4
(3)
P 		98.7
(-3)
P 		62
C 148.2
(0.4)
P 		156.1
(1.4)
P 		168.2
(3)
P 		122.9
(-3)
P 		45
avr 134.5
(0.7) 		142.1
(1.9) 		149.4
(3) 		111.2
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 71.8
(-3)
P 		133.5
(-1.4)
P 		297.2
(3)
P 		259.8
(2)
P 		155.6
(-0.8)
P 		164.6
(-0.5)
P 		225
B 108.7
(-3)
P 		169.6
(-0.7)
P 		221.3
(1.3)
P 		266.9
(3)
P 		188.7
(0)
P 		154.9
(-1.2)
P 		158
C 89
(-3)
P 		185.3
(-0.2)
P 		274.9
(2.4)
P 		295.6
(3)
P 		158.3
(-1)
P 		149
(-1.3)
P 		207
avr 89.8
(-3) 		162.8
(-0.6) 		264.5
(2.7) 		274.1
(3) 		167.5
(-0.5) 		156.2
(-0.8) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 40.3
(3)
P 		26.5
(-0.5)
P 		31.3
(0.7)
P 		16.4
(-3)
P 		24
B 46.1
(3)
P 		36.5
(0.7)
P 		37.2
(0.9)
P 		21
(-3)
P 		25
C 49.1
(1.5)
P 		44.9
(0.8)
P 		58.6
(3)
P 		20.7
(-3)
P 		38
avr 45.2
(3) 		36
(0.9) 		42.4
(2.3) 		19.4
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 13.2
(-3)
P 		47.5
(0.9)
P 		64.7
(2.9)
P 		65.9
(3)
P 		46.9
(0.8)
P 		40.1
(0.1)
P 		53
B 37.8
(-3)
P 		56.5
(-0.1)
P 		53.7
(-0.5)
P 		70.7
(2.1)
P 		76.7
(3)
P 		57.7
(0.1)
P 		39
C 33
(-3)
P 		56.5
(0.8)
P 		70
(3)
P 		59.5
(1.3)
P 		51.2
(-0)
P 		49.9
(-0.3)
P 		37
avr 28
(-3) 		53.5
(1.1) 		62.8
(2.6) 		65.4
(3) 		58.3
(1.9) 		49.2
(0.4) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179196_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12810
Sequence Type Exemplar sequence
Representative Public ID F25C8.2 NCBI
Target Description F25C8.2 /REP_DB=WormBase Gene ID /WP=CE18635 /TR=Q9XV67 /GB=CAB04171.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075633(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075633 NCBI Caenorhabditis elegans AMine oXidase family member (amx-3) (amx-3) mRNA, complete cds. 11/11 None
GENEFINDER00000010156 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20897021:20900221:-1 11/11 None
F25C8.2 ENSEMBL cdna:known chromosome:CEL140:V:20897021:20900340:-1 gene:F25C8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010150 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20897020-20899716(-) 97.45 97.45
Public Domain and Genome References
Gene Title
Gene Symbol amx-3
Ensembl F25C8.2
Entrez Gene 184919 Entrez gene
SwissProt Q9XV67 EMBL-EBI
WormBase CE18635 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04171 Hypothetical protein F25C8.2 [Caenorhabditis elegans] ref|NP_508034.1| AMine oXidase family member (amx-3) [Caenorhabditis elegans] 0.0
blast CAE61626 Hypothetical protein CBG05552 [Caenorhabditis briggsae] 1.0E-146
blast CAE61626 Hypothetical protein CBG05552 [Caenorhabditis briggsae] 1.0E-144
blast CAE75438 Hypothetical protein CBG23432 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR002937 EMBL-EBI Amine oxidase 8.8E-87
Pfam IPR002937 EMBL-EBI Amine oxidase 8.8E-87
Sequence
Target Sequence 
>C. ELEGANS:179196_AT
gatgcctgcattgtaacttgttctcttggatacttaaagaagcatcataaaactctgttt
acacctcaattgactagtgttaaacaagatgcaatcaatagaatgggattcggaaacaat
ttaaaagtttttttggaatactcagattcatggtggaactcattaaacacaatcctaatt
ctgactcatggagaaaatgaggacttcatggtttttcaaccaagctcttgggcggaaaat
attcttctctgttggattgcaggttccggtcctaagaaaatttgtgataaaacggatttc
gaactcaaaatcttattagacacacatttgcatgatcaattgaaaaactatctcgatgtg
aaagcatcggtaaaaatttatcgaaaaaactggataaatgatgaattcacacttggaagt
tactcttacctaacaccggggcaaattgttggtgaggatatttgtattcttgcgcaacca
gttttaaaagacaataaccctgttatttgctttgctggggagcacacggattcaacaatg
tatcaaacaaccgttggtgcggttcgtagtggtctcagagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCCTGCATTGTAACTTGTTCTC 186 415 847 Antisense
TAAAACTCTGTTTACACCTCAATTG 224 639 894 Antisense
AACACAATCCTAATTCTGACTCATG 523 135 1012 Antisense
AAATATTCTTCTCTGTTGGATTGCA 93 117 1083 Antisense
TTGGATTGCAGGTTCCGGTCCTAAG 388 709 1098 Antisense
CACACTTGGAAGTTACTCTTACCTA 454 145 1254 Antisense
TCTTACCTAACACCGGGGCAAATTG 620 615 1270 Antisense
GGATATTTGTATTCTTGCGCAACCA 118 511 1302 Antisense
AACCCTGTTATTTGCTTTGCTGGGG 382 145 1342 Antisense
TGCTGGGGAGCACACGGATTCAACA 679 577 1359 Antisense
TGCGGTTCGTAGTGGTCTCAGAGAA 272 553 1404 Antisense
Sequence Source Affymetrix Proprietary Database