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[179195_at]

Description ZK265.7 /REP_DB=WormBase Gene ID /WP=CE15301 /TR=Q94404 /GB=CAB03518.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 13      4grp_high_8_8 > 17      6grp_total > 24      4grp_total > 30      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 193.1
(2.3)
P 		109.2
(-3)
P 		122.8
(-2.1)
P 		204.2
(3)
P 		95
B 218
(3)
P 		119.3
(-1.8)
P 		94
(-3)
P 		107
(-2.4)
P 		124
C 254.5
(3)
P 		118.3
(-0.9)
P 		47.2
(-3)
A 		198.6
(1.4)
P 		207
avr 221.9
(3) 		115.6
(-1.8) 		88
(-3) 		169.9
(0.7) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 208.8
(2.8)
P 		214.5
(3)
P 		171.7
(1.3)
P 		139.9
(0.1)
P 		68.2
(-2.7)
A 		61.5
(-3)
A 		153
B 238.1
(3)
P 		235.4
(2.9)
P 		205
(1.7)
P 		143.5
(-0.7)
P 		86.2
(-3)
P 		88.6
(-2.9)
P 		152
C 244.5
(2.7)
P 		255.4
(3)
P 		117.7
(-1.3)
P 		111.9
(-1.4)
P 		61.8
(-3)
A 		65.8
(-2.9)
P 		194
avr 230.5
(2.8) 		235.1
(3) 		164.8
(0.4) 		131.8
(-0.8) 		72.1
(-3) 		72
(-3) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 70.3
(3)
P 		23.7
(-3)
P 		32.1
(-1.9)
P 		29.9
(-2.2)
P 		47
B 69.5
(3)
P 		29.5
(-2)
P 		21.8
(-3)
P 		22.8
(-2.9)
P 		48
C 84.2
(3)
P 		34
(-1.4)
P 		16.5
(-3)
A 		33.5
(-1.5)
P 		68
avr 74.7
(3) 		29.1
(-2.3) 		23.5
(-3) 		28.7
(-2.4) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 38.5
(-0.7)
P 		76.3
(3)
P 		37.4
(-0.8)
P 		35.5
(-1)
P 		20.6
(-2.5)
A 		15
(-3)
A 		61
B 82.8
(3)
P 		78.4
(2.5)
P 		49.8
(-1)
P 		38
(-2.4)
P 		35
(-2.8)
P 		33
(-3)
P 		50
C 90.6
(3)
P 		77.9
(1.9)
P 		29.9
(-2.2)
P 		22.5
(-2.8)
P 		20
(-3)
A 		22
(-2.8)
P 		71
avr 70.6
(2.2) 		77.5
(3) 		39
(-1.3) 		32
(-2) 		25.2
(-2.8) 		23.3
(-3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179195_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.934
Sequence Type Exemplar sequence
Representative Public ID ZK265.7 NCBI
Target Description ZK265.7 /REP_DB=WormBase Gene ID /WP=CE15301 /TR=Q94404 /GB=CAB03518.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059848(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059848 NCBI Caenorhabditis elegans ZK265.7 (ZK265.7) mRNA, complete cds. 9/11 None
GENEFINDER00000032258 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8269714:8281002:1 9/11 None
SNAP00000032253 ENSEMBL cdna:SNAP chromosome:CEL140:I:8273796:8276822:1 9/11 None
ZK265.7.1 ENSEMBL cdna:known chromosome:CEL140:I:8270158:8277089:1 gene:ZK265.7 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8272699-8276753(+) 92.65 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK265.7
Entrez Gene 191278 Entrez gene
SwissProt Q94404 EMBL-EBI
WormBase CE32551 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03518 Hypothetical protein ZK265.7 [Caenorhabditis elegans] ref|NP_492249.2| ZK265.7 [Caenorhabditis elegans] 1.0E-137
blast CAB03520 Hypothetical protein ZK265.8 [Caenorhabditis elegans] emb|CAB00057.1| Hypothetical protein ZK265.8 [Caenorhabditis elegans] ref|NP_492250.1| ZK265.8 [Caenorhabditis elegans] 1.0E-134
blast CAE60481 Hypothetical protein CBG04095 [Caenorhabditis briggsae] 1.0E-130
blast CAB03518 Hypothetical protein ZK265.7 [Caenorhabditis elegans] ref|NP_492249.2| ZK265.7 [Caenorhabditis elegans] 1.0E-121
blast CAB03518 Hypothetical protein ZK265.7 [Caenorhabditis elegans] ref|NP_492249.2| ZK265.7 [Caenorhabditis elegans] 1.0E-113
blast CAE60482 Hypothetical protein CBG04096 [Caenorhabditis briggsae] 1.0E-96
blast CAE60482 Hypothetical protein CBG04096 [Caenorhabditis briggsae] 9.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 2.3E-52
Sequence
Target Sequence 
>C. ELEGANS:179195_AT
atttcagaccaactacagctacaacaactgccagagtaaccccgaaaaagtcaacaaaac
gaattggtacaggaacaactgcacatcctccactcttcccaaaagatgcatcaaaagcgc
gtgttattaatattgttgatattcgtaacaagcacgcaacaagtttgttaaattattgtc
aattttttgtctttaagggtgttccacttccaaacgacgatatctcacttgatgacacat
ttgaggagacacgcagaaaattggagaaagaaatgaaagaagagaacgaacgattgaggg
aaatgcttgcagatgaagaggaagaaaattctaatgatatttcggatattgatgatgatg
atggtattactgctgaagagcagagggaagaagaacgggaaagatatcgaatggagagaa
gacgcgctgaagaacgacgtttgcaagaggacacaattctgcgacgaatcgaagaggaag
aaatccgtgaagcagataaggatcgaccgaatcgacgagaagctgatgaggatatgtatg
gaagtgattttgaaaactctactggtagcacttccctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCAGACCAACTACAGCTACAAC 679 15 821 Antisense
CAACAACTGCCAGAGTAACCCCGAA 122 189 842 Antisense
TACAGGAACAACTGCACATCCTCCA 97 645 888 Antisense
CCTCCACTCTTCCCAAAAGATGCAT 237 267 907 Antisense
GATGCATCAAAAGCGCGTGTTATTA 100 413 925 Antisense
TGTCTTTAAGGGTGTTCCACTTCCA 423 191 1008 Antisense
TTCCACTTCCAAACGACGATATCTC 515 697 1022 Antisense
GACGATATCTCACTTGATGACACAT 143 379 1036 Antisense
GACGCGCTGAAGAACGACGTTTGCA 481 381 1241 Antisense
GAGGACACAATTCTGCGACGAATCG 263 405 1267 Antisense
AAACTCTACTGGTAGCACTTCCCTT 575 127 1374 Antisense
Sequence Source Affymetrix Proprietary Database