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[179194_at]

Description W07G4.5 /REP_DB=WormBase Gene ID /WP=CE03793 /TR=Q27408 /GB=CAB01446.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 95      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 58      6grp_total > 86      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20588
1 2 3 4 range
A 1582
(-3)
P 		2830
(-2.6)
P 		2256.7
(-2.8)
P 		22170.2
(3)
P 		20588
B 1755.7
(-3)
P 		1945.5
(-2.9)
P 		2318.4
(-2.8)
P 		18228.7
(3)
P 		16473
C 1736.7
(-3)
P 		1812.2
(-3)
P 		2305
(-2.8)
P 		17662.3
(3)
P 		15926
avr 1691.5
(-3) 		2195.9
(-2.8) 		2293.4
(-2.8) 		19353.7
(3) 		17662

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1635
1 2 3 4 5 6 range
A 1880.1
(-3)
P 		2319.5
(0.3)
P 		2089.6
(-1.4)
P 		2340.6
(0.5)
P 		2564
(2.2)
P 		2670.2
(3)
P 		790
B 1815.6
(-3)
P 		2026.7
(-1.9)
P 		2364.6
(-0.2)
P 		2458
(0.2)
P 		2729.1
(1.6)
P 		3005.7
(3)
P 		1190
C 1772.1
(-3)
P 		2131.3
(-1.7)
P 		2231.7
(-1.3)
P 		2833.8
(0.9)
P 		2430.5
(-0.6)
P 		3406.9
(3)
P 		1635
avr 1822.6
(-3) 		2159.2
(-1.3) 		2228.6
(-1) 		2544.1
(0.6) 		2574.5
(0.7) 		3027.6
(3) 		1205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3404
1 2 3 4 range
A 576
(-3)
P 		614.3
(-2.9)
P 		589.9
(-3)
P 		3245.3
(3)
P 		2669
B 559.9
(-2.9)
P 		480.5
(-3)
P 		537.2
(-2.9)
P 		3884.6
(3)
P 		3404
C 574.9
(-2.9)
P 		521
(-3)
P 		803.4
(-2.3)
P 		2978.1
(3)
P 		2457
avr 570.3
(-2.9) 		538.6
(-3) 		643.5
(-2.8) 		3369.3
(3) 		2831

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 794
1 2 3 4 5 6 range
A 346.6
(-3)
P 		824.9
(3)
P 		455.1
(-1.6)
P 		593.6
(0.1)
P 		773.7
(2.4)
P 		650.1
(0.8)
P 		478
B 631.7
(-2.4)
P 		674.6
(-1.9)
P 		574.2
(-3)
P 		651
(-2.2)
P 		1108.8
(2.9)
P 		1120.8
(3)
P 		547
C 656.8
(-2.1)
P 		650.3
(-2.1)
P 		568
(-3)
P 		569.9
(-3)
P 		786.5
(-0.7)
P 		1140.5
(3)
P 		573
avr 545
(-2.8) 		716.6
(-0.5) 		532.4
(-3) 		604.8
(-2) 		889.7
(1.9) 		970.5
(3) 		438
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179194_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13667
Sequence Type Exemplar sequence
Representative Public ID W07G4.5 NCBI
Target Description W07G4.5 /REP_DB=WormBase Gene ID /WP=CE03793 /TR=Q27408 /GB=CAB01446.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073860(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073860 NCBI Caenorhabditis elegans W07G4.5 (W07G4.5) mRNA, complete cds. 11/11 None
SNAP00000014600 ENSEMBL cdna:SNAP chromosome:CEL140:V:13050590:13051765:1 11/11 None
GENEFINDER00000014603 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13050590:13051765:1 11/11 None
W07G4.5 ENSEMBL cdna:known chromosome:CEL140:V:13050073:13051827:1 gene:W07G4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13050072-13051765(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W07G4.5
Entrez Gene 179791 Entrez gene
SwissProt Q27408 EMBL-EBI
WormBase CE03793 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01446 Hypothetical protein W07G4.5 [Caenorhabditis elegans] ref|NP_506261.1| W07G4.5 [Caenorhabditis elegans] 0.0
blast CAE64673 Hypothetical protein CBG09449 [Caenorhabditis briggsae] 1.0E-143
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506261.1 1 12-34
W07G4.5 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:179194_AT
agaaggtcggacgtactttgcctcttgatatggaatcatatgacgacgacaacatgtggc
ttttgaccaagaagagcaaaactgacacatctcctgaaactccacacgaagttgatactg
tgaagagttggctgagccgtctaccagatggaaatgctgctctcaacgtcgacttatcgt
cttttgtaagcggagaatcgaaaagtgaaagctcggagagcaatgcaagttcatttgaac
ttctaaatgaagtggcaatgtgcttgaagtatactgccaacgccgacaaggcattccgtg
atagaattgaaactattcacaacgagccagctagtaaatggttacttcattccgatgaag
aaagctcttcaacacacctaccacgccctccagttccagcaagattccgagatgatggtg
aagacaacgaggatgattttgagagagaggacatcaataccgaatgctcatctgactcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGGTCGGACGTACTTTGCCTCT 52 75 581 Antisense
GACGACGACAACATGTGGCTTTTGA 696 379 622 Antisense
AAAACTGACACATCTCCTGAAACTC 227 131 658 Antisense
GAAGAGTTGGCTGAGCCGTCTACCA 499 337 702 Antisense
GATGGAAATGCTGCTCTCAACGTCG 543 405 727 Antisense
CTCAACGTCGACTTATCGTCTTTTG 225 225 742 Antisense
GCTTGAAGTATACTGCCAACGCCGA 234 303 842 Antisense
CCAACGCCGACAAGGCATTCCGTGA 588 275 857 Antisense
GAAACTATTCACAACGAGCCAGCTA 491 353 889 Antisense
GAAGAAAGCTCTTCAACACACCTAC 221 339 937 Antisense
AATACCGAATGCTCATCTGACTCAT 177 173 1036 Antisense
Sequence Source Affymetrix Proprietary Database