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[179193_at]

Description C04B4.5 /REP_DB=WormBase Gene ID /WP=CE05207 /TR=Q17617 /GB=CAA93524.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 18.4
(3)
A 		8.4
(-2.6)
A 		7.6
(-3)
A 		11.9
(-0.6)
A 		11
B 4.5
(-2.4)
A 		33.6
(3)
A 		1.5
(-3)
A 		2.8
(-2.8)
A 		32
C 6.3
(-2.9)
A 		5.3
(-3)
A 		5.3
(-3)
A 		52.5
(3)
A 		47
avr 9.7
(-1.3) 		15.8
(0.8) 		4.8
(-3) 		22.4
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 5.1
(-2.7)
A 		9.5
(-1.9)
A 		37.5
(3)
A 		8.1
(-2.1)
A 		3.2
(-3)
A 		5.5
(-2.6)
A 		34
B 7.1
(-2.7)
A 		19.8
(-0.6)
A 		42.8
(3)
A 		4.9
(-3)
A 		30.3
(1)
A 		7.7
(-2.6)
A 		38
C 9.4
(1.5)
A 		12.1
(3)
A 		7.2
(0.2)
A 		8.7
(1.1)
A 		4.6
(-1.3)
A 		1.6
(-3)
A 		11
avr 7.2
(-2.4) 		13.8
(-0.8) 		29.2
(3) 		7.2
(-2.4) 		12.7
(-1.1) 		4.9
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 6.7
(3)
A 		1.8
(-2.9)
A 		2
(-2.6)
A 		1.7
(-3)
A 		5
B 1.4
(-2.2)
A 		8.3
(3)
A 		0.4
(-3)
A 		0.6
(-2.8)
A 		8
C 2.1
(-2.5)
A 		1.5
(-3)
A 		1.8
(-2.8)
A 		8.9
(3)
A 		7
avr 3.4
(1.8) 		3.9
(3) 		1.4
(-3) 		3.7
(2.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.9
(-3)
A 		3.4
(-0.9)
A 		8.2
(3)
A 		2.1
(-2)
A 		1
(-2.9)
A 		1.3
(-2.7)
A 		7
B 2.5
(-2.3)
A 		6.6
(-0.1)
A 		10.4
(2)
A 		1.3
(-3)
A 		12.3
(3)
A 		2.9
(-2.1)
A 		11
C 3.5
(2.6)
A 		3.7
(3)
A 		1.8
(-0.6)
A 		1.7
(-0.8)
A 		1.5
(-1.1)
A 		0.5
(-3)
A 		3
avr 2.3
(-2.2) 		4.6
(0.5) 		6.8
(3) 		1.7
(-2.9) 		4.9
(0.8) 		1.6
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179193_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17249
Sequence Type Exemplar sequence
Representative Public ID C04B4.5 NCBI
Target Description C04B4.5 /REP_DB=WormBase Gene ID /WP=CE05207 /TR=Q17617 /GB=CAA93524.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077649(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077649 NCBI Caenorhabditis elegans C04B4.5 (C04B4.5) mRNA, complete cds. 11/11 None
GENEFINDER00000029838 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12287580:12288275:-1 11/11 None
C04B4.5 ENSEMBL cdna:known chromosome:CEL140:X:12287580:12288275:-1 gene:C04B4.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029835 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12287579-12288275(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04B4.5
Entrez Gene 182192 Entrez gene
SwissProt Q17617 EMBL-EBI
WormBase CE05207 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93524 Hypothetical protein C04B4.5 [Caenorhabditis elegans] ref|NP_510050.1| C04B4.5 [Caenorhabditis elegans] 1.0E-109
Sequence
Target Sequence 
>C. ELEGANS:179193_AT
cagcttctcccggctgaattcgaaacaaacgatagagaattcaatatgggaaatttctta
tgggcaatgaatgaaccgaatcagggagttaacaatatttcggaagaaagtgatgtagaa
agttttgttgatgaaagtgaggaggaggatgaagctgaaaacgatgaaaatttgcaagtt
ccaatagagaataattgggaccaggagatgcatcagttcattcgtcgtcttttggaagta
aatctctttaaaatttctaaaaaactgcatattggttttgtagaattttggacatgtcga
ggaagaggagccgcagaatatggagccgtagataggaaaggcagtgcagagtaccatatc
tcttacttcgattccacactgtttggattttccttattccaaacgctgtttgcagatatt
gtagaattcggttctagttttgtatcattatcgagttttaacagtgaacattgtacaatc
tcaatttttcaatcttgcagtctcaaatttttttccgaatctgatttttggtccagactc
tcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCTTCTCCCGGCTGAATTCGAAA 494 203 127 Antisense
GGGACCAGGAGATGCATCAGTTCAT 57 495 323 Antisense
ATCAGTTCATTCGTCGTCTTTTGGA 605 29 338 Antisense
GGAGCCGCAGAATATGGAGCCGTAG 575 521 433 Antisense
GAAAGGCAGTGCAGAGTACCATATC 185 361 462 Antisense
GTACCATATCTCTTACTTCGATTCC 100 459 477 Antisense
GATTCCACACTGTTTGGATTTTCCT 516 433 496 Antisense
TTTTCCTTATTCCAAACGCTGTTTG 666 673 514 Antisense
GAATTCGGTTCTAGTTTTGTATCAT 131 325 550 Antisense
TCAATTTTTCAATCTTGCAGTCTCA 4 635 607 Antisense
CTGATTTTTGGTCCAGACTCTCAAA 208 239 647 Antisense
Sequence Source Affymetrix Proprietary Database