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[179192_s_at]

Description K10G4.7 /REP_DB=WormBase Gene ID /WP=CE16250 /TR=O45677 /GB=CAB07261.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 34      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 28.8
(0.4)
A 		15.2
(-1.8)
A 		7.7
(-3)
A 		44.6
(3)
A 		37
B 3.4
(-3)
A 		36.1
(3)
A 		24.2
(0.8)
A 		9.3
(-1.9)
A 		33
C 10.8
(-3)
A 		39.6
(3)
A 		17.2
(-1.7)
A 		26.3
(0.2)
A 		29
avr 14.3
(-3) 		30.3
(3) 		16.4
(-2.2) 		26.7
(1.7) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 8.3
(-2.3)
A 		4.6
(-3)
A 		7.9
(-2.3)
A 		17.5
(-0.4)
A 		34.3
(3)
A 		8.6
(-2.2)
A 		30
B 34.1
(3)
A 		21.7
(0.4)
A 		12.9
(-1.4)
A 		5
(-3)
A 		24.1
(0.9)
A 		28.8
(1.9)
A 		29
C 4.7
(-3)
A 		40.5
(0)
A 		4.5
(-3)
A 		75.4
(3)
P 		27.2
(-1.1)
P 		19.5
(-1.7)
A 		71
avr 15.7
(-1.2) 		22.3
(0.4) 		8.4
(-3) 		32.6
(3) 		28.5
(2) 		19
(-0.4) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.5
(3)
A 		3.3
(-2.1)
A 		2
(-3)
A 		6.5
(0.2)
A 		9
B 1.1
(-3)
A 		8.9
(3)
A 		5.6
(0.5)
A 		2
(-2.3)
A 		8
C 3.6
(-3)
A 		11.4
(3)
A 		6
(-1.2)
A 		4.4
(-2.4)
A 		8
avr 5.1
(-1.7) 		7.9
(3) 		4.5
(-2.7) 		4.3
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.5
(-3)
A 		1.6
(-2.9)
A 		1.7
(-2.9)
A 		4.4
(-1)
A 		10.4
(3)
A 		2.1
(-2.6)
A 		9
B 11.8
(3)
A 		7.2
(0.4)
A 		3.1
(-2)
A 		1.3
(-3)
A 		9.8
(1.9)
A 		10.8
(2.4)
A 		11
C 1.7
(-2.7)
A 		12.3
(1.8)
A 		1.1
(-3)
A 		15.2
(3)
P 		8.8
(0.3)
P 		6.5
(-0.7)
A 		14
avr 5
(-0.7) 		7
(0.9) 		2
(-3) 		7
(0.9) 		9.7
(3) 		6.5
(0.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179192_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12814
Sequence Type Exemplar sequence
Representative Public ID K10G4.7 NCBI
Target Description K10G4.7 /REP_DB=WormBase Gene ID /WP=CE16250 /TR=O45677 /GB=CAB07261.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075033(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075033 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-261) (srh-261) mRNA, complete cds. 11/11 A 
K10G4.7 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17278466:17280847:1 gene:K10G4.7 11/11 A 
K03D7.4 ENSEMBL cdna:known chromosome:CEL140:V:17499995:17501550:1 gene:K03D7.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034108 3/11 Cross Hyb Matching Probes None
GENEFINDER00000034120 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17278465-17280847(+) 100.0 100.0
chrV:17499994-17501550(+) 93.91 93.91
Public Domain and Genome References
Gene Title
Gene Symbol srh-261
Ensembl K10G4.7
K03D7.4
Entrez Gene 186944 Entrez gene
SwissProt O45650 EMBL-EBI
WormBase CE18845 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04559 Hypothetical protein K03D7.4 [Caenorhabditis elegans] ref|NP_507434.1| Serpentine Receptor, class H family member (srh-261) [Caenorhabditis elegans] 0.0
blast T23587 hypothetical protein K10G4.7 - Caenorhabditis elegans 1.0E-163
blast CAB03318 Hypothetical protein T06E6.9 [Caenorhabditis elegans] ref|NP_506834.1| Serpentine Receptor, class H family member (srh-265) [Caenorhabditis elegans] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507434.1 7 10-29,50-72,87-109,130-149,190-212,233-255,270-289
K03D7.4 7 10-29,50-72,87-109,130-149,190-212,233-255,270-289
Sequence
Target Sequence 
>C. ELEGANS:179192_S_AT
gttataaattacggagttgttgcaacttttatgttacctacatacttgagcattcctgat
gatcacaaattccaagcctccctaccgagctccatgaactccatgaacttcttcatttgg
gcaaaagattatcaagtttttttgaaatccctacttttcatcactatcttcgagctaatt
caattcgttcccctaattatgttaaccgattggaatgtgaggacatctatcagaaaatca
acgcaatcacggcagacaatgcagctccagctgaaatttctaatgactctttatgcacag
agcggtgcgttcttcctggcttgtttcactccttacgtttatatattgtatccttgtttt
actaattattacaatccaattgcaaacaactacatattcattttcgtggcgtctcgcggg
tctatgtgcactttaatcctgctcttcgcatacaaaccgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATAAATTACGGAGTTGTTGCAA 265 447 370 Antisense
GTTGTTGCAACTTTTATGTTACCTA 544 437 385 Antisense
GCAACTTTTATGTTACCTACATACT 684 317 391 Antisense
TCCATGAACTTCTTCATTTGGGCAA 452 589 469 Antisense
GAACTTCTTCATTTGGGCAAAAGAT 647 349 474 Antisense
ATTCAATTCGTTCCCCTAATTATGT 135 13 547 Antisense
TTCCCCTAATTATGTTAACCGATTG 692 633 557 Antisense
GATTGGAATGTGAGGACATCTATCA 615 435 577 Antisense
CATATTCATTTTCGTGGCGTCTCGC 223 215 762 Antisense
CTTTAATCCTGCTCTTCGCATACAA 266 223 800 Antisense
CCTGCTCTTCGCATACAAACCGTAT 446 265 807 Antisense
Sequence Source Affymetrix Proprietary Database