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[179191_at]

Description K10G4.7 /REP_DB=WormBase Gene ID /WP=CE16250 /TR=O45677 /GB=CAB07261.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 25      6grp_cgc > 99      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 5.1
(-3)
A 		6.6
(-2.6)
A 		26.9
(3)
A 		8
(-2.2)
A 		22
B 2.7
(-2.8)
A 		27.4
(3)
A 		1.9
(-3)
A 		6.2
(-2)
A 		26
C 4.3
(-2.8)
A 		10.9
(-1.9)
A 		3.1
(-3)
A 		47
(3)
A 		44
avr 4
(-3) 		15
(1) 		10.6
(-0.6) 		20.4
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 19.3
(0.1)
A 		7.8
(-2.2)
A 		6.4
(-2.5)
A 		3.9
(-3)
A 		33.9
(3)
A 		4.7
(-2.8)
A 		30
B 1.8
(-2.7)
A 		2.1
(-2.3)
A 		3.3
(-1)
A 		2.4
(-2)
A 		6.8
(3)
A 		1.5
(-3)
A 		5
C 0.7
(-3)
A 		16.4
(3)
A 		15.9
(2.8)
A 		3.4
(-2)
A 		2.3
(-2.4)
A 		3.4
(-2)
A 		16
avr 7.3
(-0.8) 		8.8
(0) 		8.5
(-0.1) 		3.2
(-3) 		14.3
(3) 		3.2
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.9
(-2.3)
A 		1.4
(-2.8)
A 		7
(3)
A 		1.2
(-3)
A 		6
B 0.9
(-2.5)
A 		6.8
(3)
A 		0.4
(-3)
A 		1.3
(-2.2)
A 		6
C 1.4
(-2.7)
A 		3.1
(-1.2)
A 		1.1
(-3)
A 		7.9
(3)
A 		7
avr 1.4
(-3) 		3.8
(3) 		2.8
(0.5) 		3.5
(2.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3.6
(-1.3)
A 		2.8
(-1.8)
A 		1.4
(-2.7)
A 		1
(-3)
A 		10.2
(3)
A 		1.2
(-2.9)
A 		9
B 0.6
(-3)
A 		0.7
(-2.7)
A 		0.8
(-2.5)
A 		0.6
(-3)
A 		2.8
(3)
A 		0.6
(-3)
A 		2
C 0.3
(-3)
A 		5
(3)
A 		4.1
(1.9)
A 		0.7
(-2.5)
A 		0.8
(-2.4)
A 		1.1
(-2)
A 		5
avr 1.5
(-1.9) 		2.8
(0.2) 		2.1
(-0.9) 		0.8
(-3) 		4.6
(3) 		1
(-2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179191_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12814
Sequence Type Exemplar sequence
Representative Public ID K10G4.7 NCBI
Target Description K10G4.7 /REP_DB=WormBase Gene ID /WP=CE16250 /TR=O45677 /GB=CAB07261.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075033
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K10G4.7 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17278466:17280847:1 gene:K10G4.7 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034120 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17278465-17280847(+) 100.0 100.0
chrV:17499994-17501550(+) 93.91 93.91
Public Domain and Genome References
Ensembl K10G4.7
Sequence
Target Sequence 
>C. ELEGANS:179191_AT
acttgagcattcctgatgatcacaaattccaagcctccctaccgagctccatgaactcca
tgaacttcttcatttgggcaaaagattatcaagtttttttgaaatccctacttttcatca
ctatcttcgagctaattcaattcgttcccctaattatgttaaccgattggaatgtgagga
catctatcagaaaatcaacgcaatcacggcagacaatgcagctccagctgaaatttctaa
tgactctttatgcacagagcggtgcgttcttcctggcttgtttcactccttacgtttata
tattgtatccttgttttactaattattacaatccaattgcaaacaactacatattcattt
tcgtggcgtctcgcgggtctatgtgcactttaatcctgctcttcgcatacaaaccgtata
aaagagcagttatcagtatttttcggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTGAGCATTCCTGATGATCACAA 65 105 413 Antisense
TGATGATCACAAATTCCAAGCCTCC 357 567 426 Antisense
TACCGAGCTCCATGAACTCCATGAA 684 649 452 Antisense
GAAATCCCTACTTTTCATCACTATC 128 363 513 Antisense
CATCACTATCTTCGAGCTAATTCAA 137 213 528 Antisense
CTTCGAGCTAATTCAATTCGTTCCC 618 213 537 Antisense
AAATCAACGCAATCACGGCAGACAA 459 117 604 Antisense
GGCAGACAATGCAGCTCCAGCTGAA 56 537 620 Antisense
ACGTTTATATATTGTATCCTTGTTT 275 95 704 Antisense
TCGCGGGTCTATGTGCACTTTAATC 605 597 783 Antisense
GAGCAGTTATCAGTATTTTTCGGAG 363 389 836 Antisense
Sequence Source Affymetrix Proprietary Database