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[179189_at] G-protein coupled receptor, srh family

Description C47E8.2 /REP_DB=WormBase Gene ID /WP=CE05438 /TR=P90776 /GB=CAA99813.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 10      6grp_cgc > 82      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 8.5
(-2.8)
A 		31.6
(-0.7)
A 		6.5
(-3)
A 		73.1
(3)
P 		67
B 36.5
(2.2)
A 		25.5
(-2.2)
A 		23.5
(-3)
A 		38.4
(3)
A 		15
C 22.5
(-3)
A 		26.3
(-2.7)
A 		28.2
(-2.5)
A 		91.6
(3)
A 		69
avr 22.5
(-2.6) 		27.8
(-2) 		19.4
(-3) 		67.7
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 5.6
(-2.9)
A 		5
(-3)
A 		7.6
(-2.4)
A 		10.7
(-1.6)
A 		6.6
(-2.6)
A 		29.2
(3)
A 		24
B 18.5
(-3)
A 		39.8
(0.5)
A 		39.1
(0.4)
A 		54.8
(3)
A 		20.2
(-2.7)
A 		32.7
(-0.7)
A 		36
C 44.5
(2)
A 		46.6
(2.2)
A 		52.7
(3)
A 		41.1
(1.6)
A 		4.5
(-3)
A 		14.7
(-1.7)
A 		48
avr 22.9
(-0) 		30.5
(1.8) 		33.1
(2.4) 		35.5
(3) 		10.4
(-3) 		25.5
(0.6) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.1
(-2.1)
A 		6.9
(0.5)
A 		1.7
(-3)
A 		10.7
(3)
P 		9
B 11.7
(3)
A 		6.3
(-2.1)
A 		5.4
(-3)
A 		8.2
(-0.3)
A 		6
C 7.4
(-3)
A 		7.6
(-2.9)
A 		9.8
(-1.2)
A 		15.4
(3)
A 		8
avr 7.4
(-1.1) 		6.9
(-1.7) 		5.6
(-3) 		11.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1
(-3)
A 		1.8
(-2.2)
A 		1.7
(-2.3)
A 		2.7
(-1.3)
A 		2
(-2)
A 		7.1
(3)
A 		6
B 6.4
(-3)
A 		13.3
(2.1)
A 		9.5
(-0.7)
A 		14.5
(3)
A 		8.2
(-1.7)
A 		12.2
(1.3)
A 		8
C 16.5
(3)
A 		14.2
(2.1)
A 		13.4
(1.8)
A 		8.3
(-0.3)
A 		1.5
(-3)
A 		4.9
(-1.6)
A 		15
avr 8
(1.2) 		9.8
(3) 		8.2
(1.4) 		8.5
(1.7) 		3.9
(-3) 		8.1
(1.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179189_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13843
Sequence Type Exemplar sequence
Representative Public ID C47E8.2 NCBI
Target Description C47E8.2 /REP_DB=WormBase Gene ID /WP=CE05438 /TR=P90776 /GB=CAA99813.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074221
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074221 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-17) (srh-17) mRNA, complete cds. None
C47E8.2 ENSEMBL cdna:known chromosome:CEL140:V:14663894:14665517:1 gene:C47E8.2 None
GENEFINDER00000005849 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14663936:14665517:1 None
SNAP00000005828 ENSEMBL cdna:SNAP chromosome:CEL140:V:14664500:14665517:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14663718-14666253(+) 98.79 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-17
Ensembl C47E8.2
Entrez Gene 183551 Entrez gene
SwissProt P90776 EMBL-EBI
WormBase CE33038 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99813 Hypothetical protein C47E8.2 [Caenorhabditis elegans] emb|CAA99797.2| Hypothetical protein C47E8.2 [Caenorhabditis elegans] ref|NP_506622.2| Serpentine Receptor, class H family member (srh-17) [Caenorhabditis elegans] 0.0
blast CAA99813 Hypothetical protein C47E8.2 [Caenorhabditis elegans] emb|CAA99797.2| Hypothetical protein C47E8.2 [Caenorhabditis elegans] ref|NP_506622.2| Serpentine Receptor, class H family member (srh-17) [Caenorhabditis elegans] 1.0E-166
blast CAE60848 Hypothetical protein CBG04557 [Caenorhabditis briggsae] 1.0E-121
blast CAE62621 Hypothetical protein CBG06743 [Caenorhabditis briggsae] 1.0E-109
blast CAE60848 Hypothetical protein CBG04557 [Caenorhabditis briggsae] 1.0E-105
blast CAA99813 Hypothetical protein C47E8.2 [Caenorhabditis elegans] emb|CAA99797.2| Hypothetical protein C47E8.2 [Caenorhabditis elegans] ref|NP_506622.2| Serpentine Receptor, class H family member (srh-17) [Caenorhabditis elegans] 1.0E-101
blast CAE62621 Hypothetical protein CBG06743 [Caenorhabditis briggsae] 2.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.4E-20
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.1E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506622.2 6 12-34,94-116,136-158,199-221,242-264,279-298
C47E8.2 6 12-34,94-116,136-158,199-221,242-264,279-298
SNAP00000005828 3 57-79,100-122,137-156
GENEFINDER00000005849 7 4-26,46-68,78-100,122-144,164-186,219-241,251-268
Sequence
Target Sequence 
>C. ELEGANS:179189_AT
ggagttcgccatgaatctgttgcaaaactttcattcatttttctaacaactcatggatta
gcttcaactattgcaatggtcgtgctcacaaaaccaatcaaaattgctgctatggaactt
tttaaatgcagaagtggcgataaagtggaacttctgcaacgtcacacggaacaaatgaac
atcacggacaaaaaattcctcaacagatgttcactgaatgattttttcctacgtttccta
ttgcattcatttgtttctccatccttatttgtgaaatttcaattgaaaacatttgataat
ctcgaatgtaaacggacggaagatgggcgtcaagagggtgaaactgtaaaattgaactat
aattatcgaaaagatgtatatgagaagactcaaacacagttaaacattttatttattttt
tcggtattcaaatatttgattgaaatcaagagtgctttttcaaaaaatacgggtttcatt
tttttttttgaaaaatttctagaagaacttttcagcagaaaaaaaaatgaatcgaacaaa
aatcagaaatgttcgattttttgttttttcgagaatattcgtcattccatatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTTCGCCATGAATCTGTTGCAA 627 517 619 Antisense
GCAAAACTTTCATTCATTTTTCTAA 106 319 640 Antisense
CAACTATTGCAATGGTCGTGCTCAC 306 189 683 Antisense
GTCGTGCTCACAAAACCAATCAAAA 524 471 697 Antisense
AATTGCTGCTATGGAACTTTTTAAA 236 179 720 Antisense
GTGGAACTTCTGCAACGTCACACGG 396 491 763 Antisense
AATTCCTCAACAGATGTTCACTGAA 707 175 812 Antisense
TGAATGATTTTTTCCTACGTTTCCT 489 573 833 Antisense
TACGTTTCCTATTGCATTCATTTGT 698 647 848 Antisense
TTTGTTTCTCCATCCTTATTTGTGA 115 667 868 Antisense
GAGAATATTCGTCATTCCATATGGA 83 391 1189 Antisense
Sequence Source Affymetrix Proprietary Database