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[179188_at]

Description K07C5.7 /REP_DB=WormBase Gene ID /WP=CE06117 /TR=Q21279 /GB=CAA94900.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 44      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 55.3
(3)
A 		47.2
(1.3)
A 		31.3
(-2.1)
A 		27
(-3)
A 		28
B 66.7
(0.1)
A 		95.5
(3)
P 		62.5
(-0.3)
A 		36.3
(-3)
A 		59
C 81.5
(-0.2)
A 		112.4
(3)
M 		53.8
(-3)
A 		65.9
(-1.8)
A 		59
avr 67.8
(0.5) 		85
(3) 		49.2
(-2.1) 		43.1
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 72.7
(-0.3)
A 		94.9
(1.1)
M 		103.6
(1.6)
A 		127
(3)
A 		67
(-0.6)
A 		26.8
(-3)
A 		100
B 78.8
(-1.4)
A 		90.2
(-0.6)
P 		75.8
(-1.6)
A 		138.9
(3)
P 		60.9
(-2.7)
A 		56.6
(-3)
A 		82
C 98.2
(2.5)
M 		81.3
(0.9)
M 		103.8
(3)
A 		88.6
(1.6)
A 		45.4
(-2.5)
A 		40
(-3)
A 		64
avr 83.2
(0.3) 		88.8
(0.7) 		94.4
(1.1) 		118.2
(3) 		57.8
(-1.7) 		41.1
(-3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 20.1
(3)
A 		10.2
(-0.7)
A 		8.2
(-1.4)
A 		4
(-3)
A 		16
B 21.3
(2.1)
A 		23.6
(3)
P 		14.5
(-0.4)
A 		7.7
(-3)
A 		16
C 27
(1.5)
A 		32.3
(3)
M 		18.8
(-0.8)
A 		11.1
(-3)
A 		21
avr 22.8
(3) 		22
(2.7) 		13.8
(-0.6) 		7.6
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 13.4
(-1.5)
A 		33.7
(3)
M 		22.6
(0.6)
A 		32.2
(2.7)
A 		20.2
(0)
A 		6.5
(-3)
A 		27
B 27.4
(-0.1)
A 		30
(0.8)
P 		18.4
(-3)
A 		36.8
(3)
P 		24.7
(-0.9)
A 		21.1
(-2.1)
A 		18
C 36.4
(3)
M 		24.8
(-0)
M 		26.4
(0.4)
A 		17.8
(-1.9)
A 		14.7
(-2.7)
A 		13.4
(-3)
A 		23
avr 25.7
(1.6) 		29.5
(3) 		22.5
(0.3) 		28.9
(2.8) 		19.9
(-0.6) 		13.7
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179188_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11878
Sequence Type Exemplar sequence
Representative Public ID K07C5.7 NCBI
Target Description K07C5.7 /REP_DB=WormBase Gene ID /WP=CE06117 /TR=Q21279 /GB=CAA94900.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073262
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K07C5.7 ENSEMBL cdna:known chromosome:CEL140:V:10361133:10364012:1 gene:K07C5.7 None
GENEFINDER00000014077 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10361142:10363826:1 None
SNAP00000014067 ENSEMBL cdna:SNAP chromosome:CEL140:V:10361142:10363826:1 None
NM_073262 NCBI Caenorhabditis elegans K07C5.7 (K07C5.7) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10362699-10363411(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07C5.7
Entrez Gene 187090 Entrez gene
SwissProt Q21279 EMBL-EBI
WormBase CE31357 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1636309_AT dm
DROSGENOME1:153651_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6464 protein modification inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4835 tubulin-tyrosine ligase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94900 Hypothetical protein K07C5.7 [Caenorhabditis elegans] ref|NP_505663.2| K07C5.7 [Caenorhabditis elegans] 0.0
blast CAE64800 Hypothetical protein CBG09593 [Caenorhabditis briggsae] 0.0
blast CAE64800 Hypothetical protein CBG09593 [Caenorhabditis briggsae] 1.0E-179
blast AAF54561 CG4089-PA [Drosophila melanogaster] gb|AAL28652.1| LD09343p [Drosophila melanogaster] ref|NP_650021.1| CG4089-PA [Drosophila melanogaster] 8.0E-99
blast AAF54561 CG4089-PA [Drosophila melanogaster] gb|AAL28652.1| LD09343p [Drosophila melanogaster] ref|NP_650021.1| CG4089-PA [Drosophila melanogaster] 1.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR004344 EMBL-EBI Tubulin-tyrosine ligase 9.8E-8
Pfam IPR004344 EMBL-EBI Tubulin-tyrosine ligase 1.3E-19
Pfam IPR004344 EMBL-EBI Tubulin-tyrosine ligase 8.2E-21
Pfam IPR004344 EMBL-EBI Tubulin-tyrosine ligase 6.0E-49
Sequence
Target Sequence 
>C. ELEGANS:179188_AT
gatgttctcatcaggtgagcgtttaaaaatatttgtttttgatattcgcttctggaaacc
agaaaaaattctaaaattgaattattctagattttgtccagaagactaccatccatttga
tgcgaataatgtggataaatatgttgttggagatgactatacacctatttgggagataaa
ttcattgaaaaaatacttcaacactcaaaaaatgagcttcaagagtacaattgattctta
tttgggaatgcaaggaatggatacaagcaagatttggttgcagataagaaatattattgg
agaggtcttccgaacacagcaaacaaaaatgctaatgagtcttcaaaacttgaaattaaa
tccacaatactttgaattaagcagatttgattttgtggtcgatgatcaattgaacgtttt
tcttatggaggtatgcatttatttttcagaatcattaaaatttacaagacatctttgcag
gcgaatatgtctcctaatctctcttcaggtcatttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTTCTCATCAGGTGAGCGTTTA 154 409 18 Antisense
ATTTGTTTTTGATATTCGCTTCTGG 580 17 48 Antisense
GAAGACTACCATCCATTTGATGCGA 33 341 118 Antisense
GGAGATGACTATACACCTATTTGGG 430 517 166 Antisense
GAGGTCTTCCGAACACAGCAAACAA 381 403 319 Antisense
AGCAGATTTGATTTTGTGGTCGATG 617 77 397 Antisense
GAACGTTTTTCTTATGGAGGTATGC 104 341 429 Antisense
GGAGGTATGCATTTATTTTTCAGAA 544 515 444 Antisense
CATCTTTGCAGGCGAATATGTCTCC 386 211 487 Antisense
CGAATATGTCTCCTAATCTCTCTTC 8 255 499 Antisense
CCTAATCTCTCTTCAGGTCATTTTA 202 269 510 Antisense
Sequence Source Affymetrix Proprietary Database