[Home] | [Total List]

[179187_s_at]

Description F46F2.3 /REP_DB=WormBase Gene ID /WP=CE05880 /TR=Q20468 /GB=CAA93772.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      6grp_highest_nonorm > 05      6grp_total > 24      4grp_total > 52      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7688
1 2 3 4 range
A 6589.1
(2.1)
P 		7743.3
(3)
P 		4541.9
(0.5)
P 		112.6
(-3)
A 		7631
B 6283.7
(2.6)
P 		6675.5
(3)
P 		5375.9
(1.8)
P 		54.9
(-3)
A 		6621
C 6328.1
(2.3)
P 		7139.2
(3)
P 		4755.1
(0.9)
P 		162
(-3)
A 		6977
avr 6400.3
(2.3) 		7186
(3) 		4891
(1.1) 		109.8
(-3) 		7076

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11657
1 2 3 4 5 6 range
A 10784.2
(3)
P 		8666.1
(1.8)
P 		8664.6
(1.8)
P 		4078.6
(-0.9)
P 		1594.7
(-2.3)
P 		365.3
(-3)
P 		10419
B 11715.6
(3)
P 		7867.8
(1)
P 		8083.7
(1.1)
P 		3995.5
(-1.1)
P 		1726.9
(-2.3)
P 		326.9
(-3)
P 		11389
C 11917.9
(3)
P 		7090
(0.5)
P 		8404.1
(1.2)
P 		2943.1
(-1.6)
P 		2306.4
(-1.9)
P 		261.4
(-3)
P 		11657
avr 11472.6
(3) 		7874.6
(1.1) 		8384.1
(1.3) 		3672.4
(-1.2) 		1876
(-2.2) 		317.9
(-3) 		11155
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2387
1 2 3 4 range
A 2399.1
(3)
P 		1680.9
(1.2)
P 		1187.3
(-0.1)
P 		16.5
(-3)
A 		2383
B 2003.8
(3)
P 		1648.7
(1.9)
P 		1245.7
(0.7)
P 		11.7
(-3)
A 		1992
C 2094.8
(3)
P 		2052.6
(2.9)
P 		1657.3
(1.7)
P 		27.3
(-3)
A 		2068
avr 2165.9
(3) 		1794.1
(2) 		1363.4
(0.8) 		18.5
(-3) 		2147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4330
1 2 3 4 5 6 range
A 1988
(0.8)
P 		3082.1
(3)
P 		1887
(0.6)
P 		1034.4
(-1.1)
P 		481.2
(-2.2)
P 		88.9
(-3)
P 		2993
B 4076.4
(3)
P 		2618.9
(0.8)
P 		1963
(-0.2)
P 		1058.3
(-1.6)
P 		701.6
(-2.1)
P 		121.9
(-3)
P 		3955
C 4417.4
(3)
P 		2163.4
(-0.1)
P 		2139
(-0.2)
P 		591.9
(-2.3)
P 		746.3
(-2.1)
P 		87.5
(-3)
P 		4330
avr 3493.9
(3) 		2621.5
(1.5) 		1996.3
(0.4) 		894.9
(-1.6) 		643
(-2) 		99.4
(-3) 		3395
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179187_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17904
Sequence Type Exemplar sequence
Representative Public ID F46F2.3 NCBI
Target Description F46F2.3 /REP_DB=WormBase Gene ID /WP=CE05880 /TR=Q20468 /GB=CAA93772.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078131(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078131 NCBI Caenorhabditis elegans F46F2.3 (F46F2.3) mRNA, complete cds. 11/11 None
SNAP00000014642 ENSEMBL cdna:SNAP chromosome:CEL140:X:15259671:15260168:-1 11/11 None
GENEFINDER00000014648 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15259671:15260168:-1 11/11 None
F46F2.3 ENSEMBL cdna:known chromosome:CEL140:X:15259497:15260207:-1 gene:F46F2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15259670-15260168(-) 78.5 100.0
Public Domain and Genome References
Gene Title
Ensembl F46F2.3
Entrez Gene 181619 Entrez gene
SwissProt Q20468 EMBL-EBI
WormBase CE05880 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510532.1 1 5-27
F46F2.3 1 5-27
SNAP00000014642 1 5-27
GENEFINDER00000014648 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:179187_S_AT
ttccttttcggtccaggaggactcggaggacttttcggtgccccagctggaggatgtgat
ccatgcgctgctgccagagccccatactacccaccacaacagccagcttaccaaccacaa
taccaacagccagcctaccagccacattaccaacaaccagcttaccaaccacaaccatct
gcctaccagaccgctccagtccaacaagcctaccaacagccagctccagtccaaaactac
cagactgtgtccgagccagttgcccaaacttccggaggaggaggagcatacgctcaagct
cca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTTTTCGGTCCAGGAGGACTCG 91 689 61 Antisense
GGAGGACTCGGAGGACTTTTCGGTG 438 513 76 Antisense
GTGCCCCAGCTGGAGGATGTGATCC 141 479 98 Antisense
TGGAGGATGTGATCCATGCGCTGCT 23 551 108 Antisense
CAGCCACATTACCAACAACCAGCTT 431 203 199 Antisense
CAGCTCCAGTCCAAAACTACCAGAC 213 203 281 Antisense
AAACTACCAGACTGTGTCCGAGCCA 155 129 294 Antisense
TACCAGACTGTGTCCGAGCCAGTTG 276 651 298 Antisense
GTTGCCCAAACTTCCGGAGGAGGAG 189 433 319 Antisense
CCGGAGGAGGAGGAGCATACGCTCA 217 263 332 Antisense
AGGAGGAGCATACGCTCAAGCTCCA 705 55 339 Antisense
Sequence Source Affymetrix Proprietary Database