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[179186_at]

Description M04C7.3 /REP_DB=WormBase Gene ID /WP=CE12398 /TR=P91906 /GB=CAB05569.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 54.8
(-1.8)
A 		50.6
(-2.1)
A 		37.4
(-3)
A 		126.9
(3)
A 		90
B 70.9
(1.3)
A 		23.5
(-3)
A 		89.3
(3)
A 		65.3
(0.8)
A 		66
C 56.3
(-3)
A 		63.6
(-1.3)
A 		74.3
(1.3)
A 		81.7
(3)
A 		25
avr 60.7
(-1) 		45.9
(-3) 		67
(-0.2) 		91.3
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 48.3
(-1.8)
A 		47.7
(-1.9)
A 		61
(0.5)
A 		41.3
(-3)
A 		75
(3)
A 		45
(-2.3)
A 		34
B 35.9
(-0)
A 		56.7
(3)
A 		45.1
(1.3)
A 		15.3
(-3)
A 		53
(2.5)
A 		25.3
(-1.6)
A 		41
C 13.9
(-3)
A 		65.9
(1.4)
A 		39.5
(-0.8)
A 		84.9
(3)
A 		57.7
(0.7)
A 		44.5
(-0.4)
A 		71
avr 32.7
(-3) 		56.8
(2) 		48.5
(0.2) 		47.2
(-0) 		61.9
(3) 		38.3
(-1.8) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20
(3)
A 		11
(-2.3)
A 		9.8
(-3)
A 		18.6
(2.2)
A 		10
B 22.6
(3)
A 		5.8
(-3)
A 		20.7
(2.3)
A 		13.9
(-0.1)
A 		17
C 18.6
(-0.6)
A 		18.3
(-0.8)
A 		25.9
(3)
A 		13.8
(-3)
A 		12
avr 20.4
(3) 		11.7
(-3) 		18.8
(1.9) 		15.4
(-0.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 8.9
(-3)
A 		17
(0.5)
A 		13.3
(-1.1)
A 		10.5
(-2.3)
A 		22.6
(3)
A 		11
(-2.1)
A 		14
B 12.5
(-0.1)
A 		18.9
(2.1)
A 		11
(-0.6)
A 		4.1
(-3)
A 		21.6
(3)
A 		9.4
(-1.2)
A 		18
C 5.1
(-3)
A 		20.1
(3)
A 		10
(-1)
A 		17.1
(1.8)
A 		18.7
(2.4)
A 		14.9
(0.9)
A 		15
avr 8.8
(-3) 		18.7
(1.9) 		11.4
(-1.7) 		10.6
(-2.1) 		21
(3) 		11.8
(-1.5) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179186_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.391
Sequence Type Exemplar sequence
Representative Public ID M04C7.3 NCBI
Target Description M04C7.3 /REP_DB=WormBase Gene ID /WP=CE12398 /TR=P91906 /GB=CAB05569.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059913(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059913 NCBI Caenorhabditis elegans M04C7.3 (M04C7.3) mRNA, complete cds. 11/11 None
SNAP00000007287 ENSEMBL cdna:SNAP chromosome:CEL140:I:8554188:8554850:-1 10/11 None
GENEFINDER00000007303 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8554188:8554850:-1 11/11 None
M04C7.3 ENSEMBL cdna:known chromosome:CEL140:I:8554188:8554850:-1 gene:M04C7.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031634 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8554118-8554781(-) 84.31 100.0
Public Domain and Genome References
Gene Title
Ensembl M04C7.3
Entrez Gene 187437 Entrez gene
SwissProt P91906 EMBL-EBI
WormBase CE12398 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05569 Hypothetical protein M04C7.3 [Caenorhabditis elegans] ref|NP_492314.1| M04C7.3 [Caenorhabditis elegans] 7.0E-85
blast CAB05569 Hypothetical protein M04C7.3 [Caenorhabditis elegans] ref|NP_492314.1| M04C7.3 [Caenorhabditis elegans] 3.0E-83
blast CAB03024 Hypothetical protein F30A10.7 [Caenorhabditis elegans] ref|NP_492520.1| F30A10.7 [Caenorhabditis elegans] 6.0E-13
blast CAB03024 Hypothetical protein F30A10.7 [Caenorhabditis elegans] ref|NP_492520.1| F30A10.7 [Caenorhabditis elegans] 7.0E-13
blast D89042 protein F14F9.6 [imported] - Caenorhabditis elegans 2.0E-11
Sequence
Target Sequence 
>C. ELEGANS:179186_AT
aagttcgcgaactactcgtccaaattcgggtagcggtaggggtatccatggggaggggag
gggaactaatgcatttgatgtttcagtttcgtcgtcttcggttaccagagttccaggttg
tgctgtaaagtcggtgttttgtgattatggtatcgttggatctcgttcttctcgtgaagt
tggctcgtcggttgcaggcaatgctaggagaatagaagcttgtgctaagagaactgagaa
tagaagtgacaggagaacgaaccgcggccaacaaggtgggagaaacaagagtcgattccc
gatgacaactggaaagcctgcagctggtaaagaagcccatttggatgacccatcgaaagg
aaagatagctgtaaatggtgatcgtttccgacacggcactctcctaagccagtctcttcg
tcaaaaccaaagccgacaggtcgtgcgaggatcagctcccattactgatcatgccgccac
tcgcaacagaggtcgatataccgcttctggaagacgtcgcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTCGCGAACTACTCGTCCAAAT 116 155 75 Antisense
TTGATGTTTCAGTTTCGTCGTCTTC 269 705 149 Antisense
GTCGTCTTCGGTTACCAGAGTTCCA 423 473 165 Antisense
CTTCTCGTGAAGTTGGCTCGTCGGT 493 219 242 Antisense
GAGTCGATTCCCGATGACAACTGGA 701 399 363 Antisense
GAAGCCCATTTGGATGACCCATCGA 684 343 406 Antisense
AAATGGTGATCGTTTCCGACACGGC 538 119 447 Antisense
GCCAGTCTCTTCGTCAAAACCAAAG 460 277 482 Antisense
GCCGACAGGTCGTGCGAGGATCAGC 97 285 506 Antisense
TCAGCTCCCATTACTGATCATGCCG 700 623 526 Antisense
TACCGCTTCTGGAAGACGTCGCACT 587 649 573 Antisense
Sequence Source Affymetrix Proprietary Database