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[179183_at]

Description F59A1.9 /REP_DB=WormBase Gene ID /WP=CE18793 /TR=Q9XUV8 /GB=CAB04537.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 37.6
(3)
A 		5.7
(-3)
A 		14
(-1.4)
A 		11.9
(-1.8)
A 		32
B 13
(-2.7)
A 		10.8
(-3)
A 		11.8
(-2.9)
A 		63.1
(3)
A 		52
C 3.4
(-3)
A 		5
(-2.8)
A 		14.2
(-1.8)
A 		59.2
(3)
A 		56
avr 18
(-1.3) 		7.2
(-3) 		13.3
(-2) 		44.7
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 23.2
(-3)
A 		30.8
(-2.4)
A 		47.9
(-1.1)
A 		51.1
(-0.9)
A 		90.3
(2)
A 		103.2
(3)
P 		80
B 23.4
(-2.4)
A 		39.4
(-0.6)
A 		17.8
(-3)
A 		20.6
(-2.7)
A 		31.9
(-1.4)
A 		71.2
(3)
P 		53
C 22.2
(-0.6)
A 		34.9
(1.5)
A 		7.5
(-3)
A 		33.4
(1.2)
A 		44.4
(3)
A 		42.9
(2.8)
P 		37
avr 22.9
(-3) 		35
(-1.5) 		24.4
(-2.8) 		35
(-1.5) 		55.5
(1) 		72.4
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.7
(3)
A 		1.2
(-3)
A 		3.7
(-1.8)
A 		1.7
(-2.8)
A 		13
B 4.1
(-2.2)
A 		2.7
(-3)
A 		2.7
(-3)
A 		13.4
(3)
A 		11
C 1.1
(-3)
A 		1.4
(-2.8)
A 		5
(-0.4)
A 		10
(3)
A 		9
avr 6.3
(1.1) 		1.8
(-3) 		3.8
(-1.2) 		8.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 4.3
(-3)
A 		11
(-1.2)
A 		10.4
(-1.4)
A 		13
(-0.7)
A 		27.2
(3)
A 		25.1
(2.4)
P 		23
B 8.1
(-2)
A 		13.1
(-0.6)
A 		4.3
(-3)
A 		5.4
(-2.7)
A 		13
(-0.7)
A 		26.6
(3)
P 		22
C 8.2
(0)
A 		10.6
(1.2)
A 		1.9
(-3)
A 		6.7
(-0.7)
A 		14.4
(3)
A 		14.4
(3)
P 		13
avr 6.9
(-2.5) 		11.6
(-0.8) 		5.5
(-3) 		8.4
(-1.9) 		18.2
(1.6) 		22
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179183_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14027
Sequence Type Exemplar sequence
Representative Public ID F59A1.9 NCBI
Target Description F59A1.9 /REP_DB=WormBase Gene ID /WP=CE18793 /TR=Q9XUV8 /GB=CAB04537.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075065(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075065 NCBI Caenorhabditis elegans F59A1.9 (F59A1.9) mRNA, complete cds. 11/11 None
SNAP00000002314 ENSEMBL cdna:SNAP chromosome:CEL140:V:17656058:17657857:-1 11/11 None
GENEFINDER00000002335 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17656058:17657857:-1 11/11 None
F59A1.9 ENSEMBL cdna:known chromosome:CEL140:V:17656058:17657857:-1 gene:F59A1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17656057-17657857(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59A1.9
Entrez Gene 186562 Entrez gene
SwissProt Q9XUV8 EMBL-EBI
WormBase CE18793 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4553 hydrolase activity, hydrolyzing O-glycosyl compounds inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04537 Hypothetical protein F59A1.9 [Caenorhabditis elegans] ref|NP_507466.1| F59A1.9 [Caenorhabditis elegans] 0.0
blast CAA21737 Hypothetical protein Y47H9C.11 [Caenorhabditis elegans] ref|NP_493020.2| Y47H9C.11 [Caenorhabditis elegans] 6.0E-25
blast CAA21737 Hypothetical protein Y47H9C.11 [Caenorhabditis elegans] ref|NP_493020.2| Y47H9C.11 [Caenorhabditis elegans] 2.0E-24
blast CAB60575 Hypothetical protein Y37H2A.6 [Caenorhabditis elegans] ref|NP_507538.1| Y37H2A.6 [Caenorhabditis elegans] 3.0E-24
blast CAB60575 Hypothetical protein Y37H2A.6 [Caenorhabditis elegans] ref|NP_507538.1| Y37H2A.6 [Caenorhabditis elegans] 4.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-7
Sequence
Target Sequence 
>C. ELEGANS:179183_AT
gattatgacacgtacgcagtccaccgggagtacactaatgacgtcgtcgaggacgaattc
ggagaaattgacgaacgagccagggatgaggctggaatgaagaagctgctgcagcacatg
tctggaattttgaaaaattcgaaaatccgattggagctgctttttgtgaattcacaagga
aacaaaatggccggcgatatgttgaaaaatgcgttcaaaaagaagattttcaagctgtcc
cagctaatccagacgaagagactcagaatgtcagaactcgatataattggaattctcctc
gaatgcccacactttgagtcaggaaccttcaagtatcaagtaattttgagcgaaatcaag
gattatttgcaactcttcgagccgaataatattgtggattggcttcaatccagtgtaatc
tacgaaacgactgcaggcacaaagttccaagtcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTATGACACGTACGCAGTCCACC 167 431 448 Antisense
GGGAGTACACTAATGACGTCGTCGA 350 493 473 Antisense
AGCTGCTGCAGCACATGTCTGGAAT 327 81 551 Antisense
ATCCGATTGGAGCTGCTTTTTGTGA 48 33 592 Antisense
AAGAAGATTTTCAAGCTGTCCCAGC 242 153 667 Antisense
CTGTCCCAGCTAATCCAGACGAAGA 44 241 682 Antisense
AATTGGAATTCTCCTCGAATGCCCA 472 179 732 Antisense
GAATGCCCACACTTTGAGTCAGGAA 103 331 748 Antisense
TATTTGCAACTCTTCGAGCCGAATA 431 659 811 Antisense
GGCTTCAATCCAGTGTAATCTACGA 568 537 848 Antisense
TGCAGGCACAAAGTTCCAAGTCAGA 368 579 879 Antisense
Sequence Source Affymetrix Proprietary Database