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[179180_at]

Description F36D1.3 /REP_DB=WormBase Gene ID /WP=CE18664 /TR=Q9XV42 /GB=CAB04305.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 06      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 90.8
(3)
A 		25.5
(-3)
A 		35.3
(-2.1)
A 		74.1
(1.5)
A 		65
B 61.8
(0.8)
A 		36.6
(-3)
A 		46.5
(-1.5)
A 		76.3
(3)
A 		40
C 49.9
(-0.4)
A 		12.1
(-3)
A 		29.5
(-1.8)
A 		100.6
(3)
A 		89
avr 67.5
(1.4) 		24.7
(-3) 		37.1
(-1.7) 		83.7
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 7.6
(-3)
A 		26.9
(1.8)
A 		31.9
(3)
A 		9.3
(-2.6)
A 		30.7
(2.7)
A 		20.5
(0.2)
A 		24
B 23.2
(-1)
A 		30.8
(-0.1)
A 		57.6
(3)
A 		8
(-2.7)
A 		5.6
(-3)
A 		33.8
(0.3)
A 		52
C 38.9
(3)
A 		14.8
(-1.9)
A 		9.6
(-3)
A 		25.5
(0.3)
A 		13.1
(-2.3)
A 		34.2
(2)
A 		29
avr 23.2
(-0.1) 		24.2
(0.2) 		33
(3) 		14.3
(-3) 		16.5
(-2.3) 		29.5
(1.9) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 33
(3)
A 		5.5
(-3)
A 		9.2
(-2.2)
A 		10.9
(-1.8)
A 		28
B 19.7
(3)
A 		9
(-3)
A 		10.8
(-2)
A 		16.3
(1.1)
A 		11
C 16.5
(2.8)
A 		3.5
(-3)
A 		10.3
(0)
A 		17
(3)
A 		14
avr 23.1
(3) 		6
(-3) 		10.1
(-1.6) 		14.7
(0.1) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.4
(-3)
A 		9.6
(3)
A 		7
(1.1)
A 		2.4
(-2.3)
A 		9.3
(2.8)
A 		5
(-0.4)
A 		8
B 8.1
(0)
A 		10.2
(1.1)
A 		14
(3)
A 		2.1
(-3)
A 		2.3
(-2.9)
A 		12.6
(2.3)
A 		12
C 14.4
(3)
A 		4.5
(-2)
A 		2.4
(-3)
A 		5.1
(-1.7)
A 		4.2
(-2.1)
A 		11.4
(1.5)
A 		12
avr 8
(1.4) 		8.1
(1.5) 		7.8
(1.2) 		3.2
(-3) 		5.3
(-1.1) 		9.7
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179180_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2063
Sequence Type Exemplar sequence
Representative Public ID F36D1.3 NCBI
Target Description F36D1.3 /REP_DB=WormBase Gene ID /WP=CE18664 /TR=Q9XV42 /GB=CAB04305.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060497(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060497 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-47) (sru-47) mRNA, complete cds. 11/11 None
GENEFINDER00000013642 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11297168:11299992:1 11/11 None
F36D1.3 ENSEMBL cdna:known chromosome:CEL140:I:11297168:11299992:1 gene:F36D1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11297098-11299923(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-47
Ensembl F36D1.3
Entrez Gene 185345 Entrez gene
SwissProt Q9XV42 EMBL-EBI
WormBase CE34549 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04305 Hypothetical protein F36D1.3 [Caenorhabditis elegans] ref|NP_492898.2| Serpentine Receptor, class U family member (sru-47) [Caenorhabditis elegans] 1.0E-180
blast CAA96667 Hypothetical protein R07B5.7 [Caenorhabditis elegans] ref|NP_505541.2| Serpentine Receptor, class U family member (sru-8) [Caenorhabditis elegans] 3.0E-53
blast CAE72268 Hypothetical protein CBG19388 [Caenorhabditis briggsae] 6.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 5.0E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492898.2 7 24-41,62-84,108-130,151-173,202-224,245-267,277-299
F36D1.3 7 24-41,62-84,108-130,151-173,202-224,245-267,277-299
GENEFINDER00000013642 7 24-41,62-84,108-130,151-173,202-224,245-267,277-299
Sequence
Target Sequence 
>C. ELEGANS:179180_AT
aagttatgtctctatgcttttccctgtaattttttgtgcaaatcgggcgattatagtgtt
ttacccgaaaaatcataatgagatttgccgacgtttcatgaaattctcactgccaattac
tgtaattcttccgtgctgcttcacatttttcatggtccccgcagtgggacactgtaccca
gcttactgcaccgtacccaatgggcgcacgtatcaacgagtacacccacctcctcacctc
atttttctgcaccctattcacattctccataaatatcacaatgatggttaaagttagaca
tattttgtttcaaaaaaaatttttcaacagaaatatcaataaaaactacaaagcggaaat
gtcattgactattactatggtgttggtttttataccatttttggtgaatggtatagttgt
ggtactttcccttcgagacccatctctaattgggtacattctatccataagacctattgc
aatagacacagcaacagtattcgagccatgggctttttatcttactcatccatttttcgg
gcggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTATGTCTCTATGCTTTTCCCT 371 155 360 Antisense
GAAATTCTCACTGCCAATTACTGTA 420 363 459 Antisense
TTCCGTGCTGCTTCACATTTTTCAT 451 699 488 Antisense
AGTGGGACACTGTACCCAGCTTACT 350 59 522 Antisense
ACCGTACCCAATGGGCGCACGTATC 268 89 549 Antisense
GGCGCACGTATCAACGAGTACACCC 640 541 562 Antisense
TATAGTTGTGGTACTTTCCCTTCGA 410 661 771 Antisense
CCCTTCGAGACCCATCTCTAATTGG 493 257 788 Antisense
GCAACAGTATTCGAGCCATGGGCTT 13 317 850 Antisense
AGCCATGGGCTTTTTATCTTACTCA 702 83 863 Antisense
CTTACTCATCCATTTTTCGGGCGGT 495 219 880 Antisense
Sequence Source Affymetrix Proprietary Database