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[179179_at]

Description M03B6.4 /REP_DB=WormBase Gene ID /WP=CE12340 /TR=Q93897 /GB=CAB01767.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 12      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 18.4
(-1.9)
A 		7.9
(-2.8)
A 		5
(-3)
A 		75.2
(3)
A 		70
B 20.5
(-0.5)
A 		16.1
(-1.2)
A 		3.5
(-3)
A 		44.8
(3)
A 		41
C 39.7
(0.8)
A 		33.2
(0)
A 		5.5
(-3)
A 		60
(3)
A 		55
avr 26.2
(-0.7) 		19.1
(-1.4) 		4.7
(-3) 		60
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 3.3
(-3)
A 		4.5
(-2.9)
A 		5.9
(-2.7)
A 		30
(0.3)
A 		51.7
(3)
A 		43.3
(2)
A 		48
B 27.7
(-0.3)
A 		3.7
(-3)
A 		3.7
(-3)
A 		13.6
(-1.9)
A 		12.7
(-2)
A 		56.1
(3)
A 		52
C 14.5
(-2.5)
A 		39
(0.7)
A 		10.5
(-3)
A 		57.1
(3)
A 		31
(-0.4)
A 		32.7
(-0.1)
P 		47
avr 15.2
(-1.6) 		15.7
(-1.6) 		6.7
(-3) 		33.6
(1.3) 		31.8
(1) 		44
(3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.7
(0.3)
A 		1.7
(-2.8)
A 		1.3
(-3)
A 		11
(3)
A 		10
B 6.5
(0.9)
A 		4
(-0.8)
A 		0.8
(-3)
A 		9.5
(3)
A 		9
C 13.1
(3)
A 		9.5
(1.1)
A 		1.9
(-3)
A 		10.1
(1.4)
A 		11
avr 8.8
(2.1) 		5.1
(-0.4) 		1.3
(-3) 		10.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.6
(-2.6)
A 		1.3
(-2.7)
A 		7.6
(-0.2)
A 		15.6
(3)
A 		10.5
(1)
A 		15
B 9.6
(-0.4)
A 		1.2
(-2.9)
A 		0.9
(-3)
A 		3.6
(-2.2)
A 		5.2
(-1.7)
A 		20.9
(3)
A 		20
C 5.4
(-1.2)
A 		11.9
(3)
A 		2.7
(-3)
A 		11.5
(2.7)
A 		10
(1.8)
A 		11
(2.4)
P 		9
avr 5.2
(-1.3) 		4.9
(-1.4) 		1.6
(-3) 		7.6
(-0.1) 		10.3
(1.2) 		14.1
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179179_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18044
Sequence Type Exemplar sequence
Representative Public ID M03B6.4 NCBI
Target Description M03B6.4 /REP_DB=WormBase Gene ID /WP=CE12340 /TR=Q93897 /GB=CAB01767.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077908(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077908 NCBI Caenorhabditis elegans M03B6.4 (M03B6.4) mRNA, complete cds. 11/11 None
GENEFINDER00000014981 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13859027:13860792:1 11/11 None
M03B6.4 ENSEMBL cdna:known chromosome:CEL140:X:13859027:13860792:1 gene:M03B6.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014977 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13859026-13860792(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M03B6.4
Entrez Gene 187418 Entrez gene
SwissProt Q93897 EMBL-EBI
WormBase CE12340 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01767 Hypothetical protein M03B6.4 [Caenorhabditis elegans] ref|NP_510309.1| M03B6.4 [Caenorhabditis elegans] 1.0E-150
blast CAE63075 Hypothetical protein CBG07360 [Caenorhabditis briggsae] 1.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510309.1 4 202-224,228-250,255-277,282-304
M03B6.4 4 202-224,228-250,255-277,282-304
GENEFINDER00000014981 4 202-224,228-250,255-277,282-304
Sequence
Target Sequence 
>C. ELEGANS:179179_AT
ggcatgcagcacaccaaaagatcacttagaaattgatagagatttatttaaaactagccc
cattgaagtgcatggcaaccttcgaacctattcaccaaaacggctgtgccaggacaaacg
aattatttttcgaaatcaaaaaatcagaaatatggcaattcacagccctgggactgagaa
cattcgaacttcttatttcactagacaaaatcggcctataatcgaagcgatgcatagaga
agaaaatatggagtacgaactcaaaaagcaacgggctcaaaaccgcgaaaagaacatgca
atttttcaatgaccacattttcgagttctttctggcttctattgtcagtatctggcaaat
cttctacacttttaacgtgattccaagcacaaatgtttttgttttctgcgtgaatattgc
ggtatgcggaagctttagtatcatgtacatgatcccagtagctgtatggtggggaactat
catgtgcagtctgatagtctacttgtcgtttgcttggctctttggagcaacatgcaactt
tgcaatgttcgcagctgctgccatttttaccaaagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATGCAGCACACCAAAAGATCAC 85 537 315 Antisense
TGCATGGCAACCTTCGAACCTATTC 188 579 383 Antisense
CGAACCTATTCACCAAAACGGCTGT 199 251 397 Antisense
AACGGCTGTGCCAGGACAAACGAAT 113 143 413 Antisense
TGGCAATTCACAGCCCTGGGACTGA 348 545 467 Antisense
GAACATTCGAACTTCTTATTTCACT 517 349 492 Antisense
TGGCTTCTATTGTCAGTATCTGGCA 687 545 647 Antisense
GTATCTGGCAAATCTTCTACACTTT 331 455 662 Antisense
ATAGTCTACTTGTCGTTTGCTTGGC 169 23 808 Antisense
GCAACTTTGCAATGTTCGCAGCTGC 250 319 848 Antisense
GCTGCTGCCATTTTTACCAAAGCCA 411 297 868 Antisense
Sequence Source Affymetrix Proprietary Database