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[179178_s_at]

Description F16H6.8 /REP_DB=WormBase Gene ID /WP=CE18604 /TR=Q9XV95 /GB=CAB04124.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 17      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 17.9
(-0.2)
A 		7.8
(-2.9)
A 		29.7
(3)
A 		7.6
(-3)
A 		22
B 4.5
(-2.5)
A 		2.6
(-3)
A 		9
(-1.2)
A 		24.1
(3)
A 		22
C 2.9
(-2.9)
A 		28.1
(0.4)
A 		1.9
(-3)
A 		48.1
(3)
A 		46
avr 8.4
(-3) 		12.8
(-1.5) 		13.5
(-1.3) 		26.6
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 62.7
(3)
A 		2.2
(-3)
A 		21.3
(-1.1)
A 		13.6
(-1.9)
A 		12.5
(-2)
A 		6.3
(-2.6)
A 		61
B 29.7
(3)
A 		19.2
(0.5)
A 		9.4
(-1.8)
A 		23.1
(1.4)
A 		4.2
(-3)
A 		22.5
(1.3)
A 		26
C 2
(-3)
A 		43.8
(3)
A 		39.8
(2.4)
A 		2.9
(-2.9)
A 		3
(-2.9)
A 		4.1
(-2.7)
A 		42
avr 31.5
(3) 		21.7
(0.6) 		23.5
(1.1) 		13.2
(-1.4) 		6.6
(-3) 		11
(-1.9) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 6.5
(1.8)
A 		1.7
(-2.5)
A 		7.8
(3)
A 		1.1
(-3)
A 		7
B 1.4
(-1.9)
A 		0.6
(-3)
A 		2.1
(-1)
A 		5.1
(3)
A 		5
C 1
(-2.8)
A 		8.1
(3)
A 		0.7
(-3)
A 		8.1
(3)
A 		7
avr 3
(-3) 		3.5
(-1.3) 		3.5
(-1.3) 		4.8
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 11.6
(3)
A 		0.8
(-3)
A 		4.6
(-0.9)
A 		3.5
(-1.5)
A 		3.8
(-1.3)
A 		1.5
(-2.6)
A 		11
B 10.3
(3)
A 		6.4
(0.3)
A 		2.3
(-2.6)
A 		6.1
(0.1)
A 		1.7
(-3)
A 		8.4
(1.7)
A 		9
C 0.7
(-3)
A 		13.3
(3)
A 		10.1
(1.5)
A 		0.6
(-3)
A 		1
(-2.8)
A 		1.4
(-2.6)
A 		13
avr 7.5
(3) 		6.8
(2.2) 		5.7
(1) 		3.4
(-1.6) 		2.2
(-3) 		3.8
(-1.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179178_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13744
Sequence Type Exemplar sequence
Representative Public ID F16H6.8 NCBI
Target Description F16H6.8 /REP_DB=WormBase Gene ID /WP=CE18604 /TR=Q9XV95 /GB=CAB04124.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075162(11), NM_075163(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075162 NCBI Caenorhabditis elegans F16H6.8 (F16H6.8) mRNA, complete cds. 11/11 None
NM_075163 NCBI Caenorhabditis elegans F16H6.9 (F16H6.9) mRNA, complete cds. 11/11 A 
SNAP00000001300 ENSEMBL cdna:SNAP chromosome:CEL140:V:18215995:18217590:-1 11/11 None
SNAP00000001302 ENSEMBL cdna:SNAP chromosome:CEL140:V:18222118:18224873:1 11/11 None
GENEFINDER00000001304 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18209756:18217434:-1 11/11 None
GENEFINDER00000001305 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18217580:18224873:1 11/11 None
F16H6.8 ENSEMBL cdna:known chromosome:CEL140:V:18216251:18217590:-1 gene:F16H6.8 11/11 None
F16H6.9 ENSEMBL cdna:known chromosome:CEL140:V:18219658:18224873:1 gene:F16H6.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18219657-18222973(+) 100.0 100.0
chrV:18216250-18217590(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl F16H6.8
F16H6.9
Entrez Gene 184595 Entrez gene
184596 Entrez gene
SwissProt Q9XV95 EMBL-EBI
Q9XV92 EMBL-EBI
WormBase CE18604 Wormbase
CE18605 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04124 Hypothetical protein F16H6.8 [Caenorhabditis elegans] ref|NP_507563.1| F16H6.8 [Caenorhabditis elegans] 0.0
blast CAB04127 Hypothetical protein F16H6.9 [Caenorhabditis elegans] ref|NP_507564.1| F16H6.9 [Caenorhabditis elegans] 0.0
blast CAB04127 Hypothetical protein F16H6.9 [Caenorhabditis elegans] ref|NP_507564.1| F16H6.9 [Caenorhabditis elegans] 1.0E-148
blast CAB04127 Hypothetical protein F16H6.9 [Caenorhabditis elegans] ref|NP_507564.1| F16H6.9 [Caenorhabditis elegans] 1.0E-147
Sequence
Target Sequence 
>C. ELEGANS:179178_S_AT
agtgctctcttgactcatgcaaaacaattcaactgccaaaacgcagtcagtcaggtcact
cagacaaaaagtgtgattaatgatttcctggatcaactattggaagcaattcattcaaga
tctccatccgcaattggcgatctgatatatgacaagtatatctttgaagcgtgcgataga
acattctcaaaggaagaaataattcaacgtcttgtcaaccgaccagccgacagggaagtg
gagttcgatgtcattgaagtcatagaattacctgagtattatctggtcgacatcactgtg
accgggctgcgttctgtaccaattgatattcgattcggtgtagcggtggccgggaatggt
ggacttctgattcatgcgaagcagtttcactgtcaaaaaagcgtcggtcaagttgatcag
aaaagacaagtattgctagttttcctggattcgctattggaagcagttcgatccagatct
gcaaccgcaatgggtgccctgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGCTCTCTTGACTCATGCAAAAC 213 61 556 Antisense
GCCAAAACGCAGTCAGTCAGGTCAC 19 279 590 Antisense
GATCTCCATCCGCAATTGGCGATCT 703 417 674 Antisense
AATTCAACGTCTTGTCAACCGACCA 672 173 756 Antisense
CAACCGACCAGCCGACAGGGAAGTG 662 181 771 Antisense
GTATTATCTGGTCGACATCACTGTG 550 453 831 Antisense
GGCTGCGTTCTGTACCAATTGATAT 478 539 860 Antisense
GATTCGGTGTAGCGGTGGCCGGGAA 171 421 887 Antisense
GTATTGCTAGTTTTCCTGGATTCGC 274 453 985 Antisense
AGTTCGATCCAGATCTGCAACCGCA 650 63 1020 Antisense
TGCAACCGCAATGGGTGCCCTGATG 146 577 1035 Antisense
Sequence Source Affymetrix Proprietary Database