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[179177_at]

Description F59A2.6 /REP_DB=WormBase Gene ID /WP=CE03434 /TR=Q21022 /GB=CAA91344.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 31      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 140.5
(3)
A 		45
(-3)
A 		89.3
(-0.2)
A 		138.6
(2.9)
A 		96
B 183.4
(3)
P 		64.2
(-3)
A 		83.2
(-2)
A 		118.6
(-0.3)
A 		119
C 106.8
(0.2)
P 		145.6
(3)
A 		84.2
(-1.4)
A 		61.4
(-3)
A 		84
avr 143.6
(3) 		84.9
(-3) 		85.6
(-2.9) 		106.2
(-0.8) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 110.4
(3)
A 		85.8
(1.5)
A 		55
(-0.4)
A 		45.8
(-1)
A 		13.6
(-3)
A 		19.3
(-2.6)
A 		97
B 85.1
(3)
A 		42.6
(-0.2)
A 		53.3
(0.6)
A 		6.2
(-3)
A 		31
(-1.1)
A 		39.9
(-0.4)
A 		79
C 102.6
(3)
A 		95.1
(2.5)
A 		72.9
(1.2)
A 		54.8
(0)
A 		5.4
(-3)
A 		65.5
(0.7)
A 		97
avr 99.4
(3) 		74.5
(1.2) 		60.4
(0.2) 		35.6
(-1.6) 		16.7
(-3) 		41.6
(-1.2) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 51.2
(3)
A 		9.8
(-3)
A 		23.3
(-1)
A 		20.3
(-1.5)
A 		41
B 58.5
(3)
P 		15.9
(-3)
A 		19.3
(-2.5)
A 		25.3
(-1.7)
A 		43
C 35.3
(1.7)
P 		41.9
(3)
A 		29.4
(0.6)
A 		10.4
(-3)
A 		32
avr 48.3
(3) 		22.5
(-2.2) 		24
(-1.9) 		18.7
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 20.4
(0.7)
A 		30.5
(3)
A 		12
(-1.2)
A 		11.6
(-1.3)
A 		4.1
(-3)
A 		4.7
(-2.9)
A 		26
B 29.6
(3)
A 		14.2
(-0.3)
A 		12.9
(-0.6)
A 		1.6
(-3)
A 		12.6
(-0.6)
A 		14.9
(-0.2)
A 		28
C 38
(3)
A 		29
(1.5)
A 		18.6
(-0.2)
A 		11
(-1.5)
A 		1.8
(-3)
A 		21.9
(0.3)
A 		36
avr 29.3
(3) 		24.6
(1.8) 		14.5
(-0.8) 		8.1
(-2.5) 		6.2
(-3) 		13.8
(-1) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179177_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7438
Sequence Type Exemplar sequence
Representative Public ID F59A2.6 NCBI
Target Description F59A2.6 /REP_DB=WormBase Gene ID /WP=CE03434 /TR=Q21022 /GB=CAA91344.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065305(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065305 NCBI Caenorhabditis elegans F59A2.6 (F59A2.6) mRNA, complete cds. 11/11 None
SNAP00000013899 ENSEMBL cdna:SNAP chromosome:CEL140:III:3418682:3427995:1 11/11 None
GENEFINDER00000013907 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3418868:3425139:1 11/11 None
F59A2.6 ENSEMBL cdna:known chromosome:CEL140:III:3415538:3424729:1 gene:F59A2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3415537-3424729(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59A2.6
Entrez Gene 175445 Entrez gene
SwissProt Q21022 EMBL-EBI
WormBase CE03434 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.2021.2.S1_AT similar to Golgi autoantigen, golgin subfamily A member 4 (Trans-Golgi p230) (256 kDa golgin) (Golgin-245) (72.1 protein) cfa
CANINE_2:CFAAFFX.8158.1.S1_AT similar to Golgi autoantigen, golgin subfamily A member 4 (Trans-Golgi p230) (256 kDa golgin) (Golgin-245) (72.1 protein) cfa
CANINE_2:CFAAFFX.8158.1.S1_S_AT similar to Golgi autoantigen, golgin subfamily A member 4 (Trans-Golgi p230) (256 kDa golgin) (Golgin-245) (72.1 protein) cfa
CANINE_2:CFAAFFX.8163.1.S1_S_AT similar to Golgi autoantigen, golgin subfamily A member 4 (Trans-Golgi p230) (256 kDa golgin) (Golgin-245) (72.1 protein) cfa
Protein Similarities
Method ID Description E-Value
blast CAA91344 Hypothetical protein F59A2.6 [Caenorhabditis elegans] emb|CAA84332.1| Hypothetical protein F59A2.6 [Caenorhabditis elegans] ref|NP_497706.1| F59A2.6 [Caenorhabditis elegans] 0.0
blast CAE65028 Hypothetical protein CBG09866 [Caenorhabditis briggsae] 0.0
blast CAE65028 Hypothetical protein CBG09866 [Caenorhabditis briggsae] 1.0E-172
blast CAE65028 Hypothetical protein CBG09866 [Caenorhabditis briggsae] 1.0E-160
blast CAA91342 Hypothetical protein K01A11.2 [Caenorhabditis elegans] ref|NP_497707.1| K01A11.2 [Caenorhabditis elegans] 1.0E-128
blast XP_710120 putative vesicular transport factor Uso1p [Candida albicans SC5314] gb|EAK90848.1| likely vesicular transport factor Uso1p [Candida albicans SC5314] 3.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR003900 EMBL-EBI RepA / Rep+ protein KID 72.0
Pfam IPR003900 EMBL-EBI RepA / Rep+ protein KID 40.0
Pfam IPR003900 EMBL-EBI RepA / Rep+ protein KID 0.86
Pfam IPR003900 EMBL-EBI RepA / Rep+ protein KID 16.0
Pfam IPR003900 EMBL-EBI RepA / Rep+ protein KID 30.0
Pfam IPR003900 EMBL-EBI RepA / Rep+ protein KID 21.0
Pfam IPR003900 EMBL-EBI RepA / Rep+ protein KID 21.0
Pfam IPR003900 EMBL-EBI RepA / Rep+ protein KID 110.0
Pfam IPR000237 EMBL-EBI GRIP domain 8.4E-27
Pfam IPR003900 EMBL-EBI RepA / Rep+ protein KID 0.86
Pfam IPR003900 EMBL-EBI RepA / Rep+ protein KID 16.0
Pfam IPR003900 EMBL-EBI RepA / Rep+ protein KID 30.0
Pfam IPR003900 EMBL-EBI RepA / Rep+ protein KID 21.0
Pfam IPR003900 EMBL-EBI RepA / Rep+ protein KID 21.0
Pfam IPR003900 EMBL-EBI RepA / Rep+ protein KID 110.0
Pfam IPR000237 EMBL-EBI GRIP domain 8.4E-27
Pfam IPR000237 EMBL-EBI GRIP domain 8.4E-27
Sequence
Target Sequence 
>C. ELEGANS:179177_AT
aacaaaagcttgacgcctcactaaccgaagcagatgatctacgaatgcaagtctcacgga
acgagaagacgccacgatccaatggaaatgcttcaactggcagaacgaaatctatggaat
tacacggaattgctgatccggcagaagctgaatatctacgaaatgtactatatcgataca
tgactaatcgagaatctcttggaaaagaatctgtgacattggcccgtgtaattggaactg
tggcccgattcgacgagtctcaaatgaaaaatgtgataagcagtgaagaatcaaggcagg
caagctgggcggcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAAAAGCTTGACGCCTCACTAAC 155 135 3062 Antisense
ACGCCTCACTAACCGAAGCAGATGA 222 91 3074 Antisense
GATCTACGAATGCAAGTCTCACGGA 226 419 3097 Antisense
GAAGACGCCACGATCCAATGGAAAT 241 339 3126 Antisense
GGAAATGCTTCAACTGGCAGAACGA 575 527 3145 Antisense
GGAATTGCTGATCCGGCAGAAGCTG 387 533 3187 Antisense
AAGAATCTGTGACATTGGCCCGTGT 232 151 3266 Antisense
GACATTGGCCCGTGTAATTGGAACT 221 365 3276 Antisense
TAATTGGAACTGTGGCCCGATTCGA 242 633 3290 Antisense
GCCCGATTCGACGAGTCTCAAATGA 263 287 3304 Antisense
TCAAGGCAGGCAAGCTGGGCGGCAG 216 631 3352 Antisense
Sequence Source Affymetrix Proprietary Database