[Home] | [Total List]

[179176_at]

Description C52G5.2 /REP_DB=WormBase Gene ID /WP=CE03086 /TR=Q18793 /GB=CAA91797.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      6grp_highest_nonorm > 55      6grp_total > 82      4grp_total > 48      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2101
1 2 3 4 range
A 90.7
(-3)
A 		1871.9
(2.3)
P 		2102.2
(3)
P 		326.9
(-2.3)
A 		2012
B 99.2
(-3)
A 		1668.5
(2.2)
P 		1921.2
(3)
P 		270.7
(-2.4)
A 		1822
C 90.9
(-3)
A 		1639.2
(1.4)
P 		2191.3
(3)
P 		326.8
(-2.3)
A 		2100
avr 93.6
(-3) 		1726.5
(2) 		2071.6
(3) 		308.1
(-2.3) 		1978

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2505
1 2 3 4 5 6 range
A 447.4
(-3)
P 		1142.5
(-1.3)
P 		1441.4
(-0.5)
P 		2836.2
(3)
P 		2079.4
(1.1)
P 		647.6
(-2.5)
P 		2389
B 380.9
(-3)
P 		1158.1
(-0.6)
P 		1129.7
(-0.6)
P 		1978.1
(2)
P 		2284.3
(3)
P 		685.8
(-2)
P 		1903
C 331.6
(-3)
P 		1067.6
(-1.1)
P 		1338.8
(-0.4)
P 		2688.9
(3)
P 		2214.2
(1.8)
P 		716.5
(-2)
P 		2357
avr 386.6
(-3) 		1122.7
(-0.9) 		1303.3
(-0.4) 		2501.1
(3) 		2192.6
(2.1) 		683.3
(-2.2) 		2115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 734
1 2 3 4 range
A 33
(-3)
A 		406.3
(1.3)
P 		549.5
(3)
P 		47.9
(-2.8)
A 		517
B 31.6
(-3)
A 		412.1
(2.5)
P 		445.2
(3)
P 		57.7
(-2.6)
A 		414
C 30.1
(-3)
A 		471.3
(0.6)
P 		763.7
(3)
P 		55.1
(-2.8)
A 		734
avr 31.6
(-3) 		429.9
(1.3) 		586.1
(3) 		53.6
(-2.8) 		555

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 846
1 2 3 4 5 6 range
A 82.5
(-3)
P 		406.3
(0.1)
P 		313.9
(-0.8)
P 		719.3
(3)
P 		627.5
(2.1)
P 		157.7
(-2.3)
P 		637
B 132.5
(-3)
P 		385.5
(-1.1)
P 		274.3
(-1.9)
P 		523.9
(-0)
P 		928.1
(3)
P 		255.7
(-2.1)
P 		796
C 122.9
(-3)
P 		325.8
(-0.9)
P 		340.8
(-0.8)
P 		540.7
(1.2)
P 		716.5
(3)
P 		239.9
(-1.8)
P 		594
avr 112.6
(-3) 		372.5
(-0.6) 		309.7
(-1.2) 		594.6
(1.5) 		757.4
(3) 		217.8
(-2) 		645
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179176_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17385
Sequence Type Exemplar sequence
Representative Public ID C52G5.2 NCBI
Target Description C52G5.2 /REP_DB=WormBase Gene ID /WP=CE03086 /TR=Q18793 /GB=CAA91797.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077738(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077738 NCBI Caenorhabditis elegans C52G5.2 (C52G5.2) mRNA, complete cds. 11/11 None
GENEFINDER00000002178 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12843300:12845181:1 11/11 None
C52G5.2 ENSEMBL cdna:known chromosome:CEL140:X:12843267:12845239:1 gene:C52G5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002174 4/11 Cross Hyb Matching Probes None
SNAP00000002175 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12843299-12845181(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C52G5.2
Entrez Gene 181420 Entrez gene
SwissProt Q18793 EMBL-EBI
WormBase CE03086 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91797 Hypothetical protein C52G5.2 [Caenorhabditis elegans] ref|NP_510139.1| C52G5.2 [Caenorhabditis elegans] 1.0E-110
blast CAE57208 Hypothetical protein CBG00062 [Caenorhabditis briggsae] 1.0E-103
blast AAF39761 Hypothetical protein C15F1.1 [Caenorhabditis elegans] ref|NP_495434.1| C15F1.1 [Caenorhabditis elegans] 2.0E-30
Sequence
Target Sequence 
>C. ELEGANS:179176_AT
agccacgtttacgtttcagctttcttattatgtatgcttattcctatttctcaacaggtt
ctcaatgaacacaatcagaaacttgaatggattgttggaaaatggaggtcagaattttca
ggaaagattttttggccaactgtgcctacaatgacatttggagaggaattggtcatcaat
gaggcaccgattgccaaatcagccaatgtacaattcttaaacttctcagcacgtgcatgg
tctcattctaccaaggaccacttccatgacgaatggggattcttgactgttgatccagtt
ggaaacgccactttgatgactacaggaaacaatggattcaccacatacgaaactggcacc
gtgtcgccaaacaaactggttctcacattgaaggatatcggacgcatctcgttctctcga
gatttacctgttgaggacttgcgaagaacgttcattcgccacgacgaccggtatatggag
caagtgattgaaatgaggacggctacacacccaaaagtcggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCACGTTTACGTTTCAGCTTTCT 82 85 28 Antisense
GTATGCTTATTCCTATTTCTCAACA 614 455 59 Antisense
GATTTTTTGGCCAACTGTGCCTACA 220 429 153 Antisense
GAGGCACCGATTGCCAAATCAGCCA 388 405 208 Antisense
AACTTCTCAGCACGTGCATGGTCTC 701 137 247 Antisense
TCTACCAAGGACCACTTCCATGACG 474 613 274 Antisense
GGAAACGCCACTTTGATGACTACAG 539 527 328 Antisense
TACGAAACTGGCACCGTGTCGCCAA 228 647 373 Antisense
GAAGGATATCGGACGCATCTCGTTC 459 333 417 Antisense
TTCGCCACGACGACCGGTATATGGA 5 697 482 Antisense
ACGGCTACACACCCAAAAGTCGGAT 588 93 526 Antisense
Sequence Source Affymetrix Proprietary Database