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[179175_at]

Description T04B2.5 /REP_DB=WormBase Gene ID /WP=CE06351 /TR=Q22152 /GB=CAA92628.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 60      4grp_highest_8_8 > 62      4grp_high_8_8 > 27      6grp_highest_nonorm > 75      6grp_total > 70      4grp_total > 29      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 468
1 2 3 4 range
A 1015.5
(3)
P 		962.1
(2)
P 		694.5
(-3)
P 		758.2
(-1.8)
P 		321
B 1059.8
(3)
P 		875.3
(-2.2)
P 		846
(-3)
P 		976.4
(0.7)
P 		214
C 1133.1
(2.9)
P 		965.6
(0.8)
P 		671
(-3)
P 		1138.6
(3)
P 		468
avr 1069.5
(3) 		934.3
(0.6) 		737.2
(-3) 		957.7
(1) 		332

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 440
1 2 3 4 5 6 range
A 957.3
(-0.7)
P 		838.4
(-3)
P 		904.2
(-1.7)
P 		1146.1
(3)
P 		876.6
(-2.3)
P 		846.5
(-2.8)
P 		308
B 887.8
(-1)
P 		773.9
(-3)
P 		993.5
(0.8)
P 		1123.8
(3)
P 		825.9
(-2.1)
P 		849.8
(-1.7)
P 		350
C 923.6
(1.3)
P 		751.6
(-2.1)
P 		804.5
(-1)
P 		1006.9
(3)
P 		705.8
(-3)
P 		862.8
(0.1)
P 		301
avr 922.9
(-0.3) 		788
(-3) 		900.7
(-0.8) 		1092.3
(3) 		802.8
(-2.7) 		853
(-1.7) 		304
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 264
1 2 3 4 range
A 369.7
(3)
P 		208.8
(-0.7)
P 		181.6
(-1.4)
P 		111
(-3)
P 		259
B 338
(3)
P 		216.2
(-2.1)
P 		196
(-3)
P 		208.1
(-2.5)
P 		142
C 375.1
(3)
P 		277.6
(-0.2)
P 		233.9
(-1.6)
P 		192
(-3)
P 		183
avr 360.9
(3) 		234.2
(-1) 		203.8
(-1.9) 		170.4
(-3) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 176.5
(-3)
P 		298.2
(3)
P 		196.9
(-2)
P 		290.7
(2.6)
P 		264.5
(1.3)
P 		206.1
(-1.5)
P 		122
B 308.9
(1.3)
P 		257.6
(-2)
P 		241.2
(-3)
P 		297.7
(0.6)
P 		335.6
(3)
P 		316.9
(1.8)
P 		94
C 342.3
(3)
P 		229.3
(-1.8)
P 		204.8
(-2.9)
P 		202.5
(-3)
P 		228.4
(-1.9)
P 		288.8
(0.7)
P 		140
avr 275.9
(3) 		261.7
(1.6) 		214.3
(-3) 		263.6
(1.8) 		276.2
(3) 		270.6
(2.5) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179175_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9995
Sequence Type Exemplar sequence
Representative Public ID T04B2.5 NCBI
Target Description T04B2.5 /REP_DB=WormBase Gene ID /WP=CE06351 /TR=Q22152 /GB=CAA92628.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069420(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069420 NCBI Caenorhabditis elegans T04B2.5 (T04B2.5) mRNA, complete cds. 11/11 None
SNAP00000005418 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10057107:10058471:-1 11/11 None
GENEFINDER00000005420 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10057107:10058471:-1 11/11 None
T04B2.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:10056575:10059150:-1 gene:T04B2.5 11/11 A 
T04B2.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:10056590:10059097:-1 gene:T04B2.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10057112-10059103(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04B2.5
Entrez Gene 177869 Entrez gene
SwissProt Q22152 EMBL-EBI
WormBase CE06351 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
45735 nutrient reservoir activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92615 Hypothetical protein T04B2.5 [Caenorhabditis elegans] emb|CAA92628.1| Hypothetical protein T04B2.5 [Caenorhabditis elegans] ref|NP_501821.1| T04B2.5 [Caenorhabditis elegans] 0.0
blast CAE59937 Hypothetical protein CBG03423 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002641 EMBL-EBI Patatin 5.9E-51
Pfam IPR002641 EMBL-EBI Patatin 5.9E-51
Sequence
Target Sequence 
>C. ELEGANS:179175_AT
aaaaccatttggagcaccgttgaatgaggatcaagatgttttattcagagaagctgcaag
agcaagcagtgctgctccaacatattttgaacctttcatatatggaaacaaagtgttggt
tgatggaagttttgttgccaattatccactgaatgtattattcaaagaatatgatagttt
ctcgaaacatcaacaaccgatccatcttgccggtgttctttcaattggaactggtgaacc
agcactcgcagaaagaaaatataaaagtgggaagagtataagagcaaaggcaatgaatat
tggacatctttcaactcttattttggaacaagtagttggtcaagatttgacagctgtaga
gatggcgcaggatagatgtcatgctcacaatattccattcaatcgattgagtccgaaggg
aatttcagttcggattgatcaaattgatgattcaaaattgatggatatgatatggacaac
acttatttatttgaccgaaaacgtccatgagatcgaccaacttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACCATTTGGAGCACCGTTGAAT 244 129 792 Antisense
AAGCAGTGCTGCTCCAACATATTTT 166 151 855 Antisense
GTTTTGTTGCCAATTATCCACTGAA 162 449 920 Antisense
ATCAACAACCGATCCATCTTGCCGG 587 25 980 Antisense
CATCTTGCCGGTGTTCTTTCAATTG 387 213 994 Antisense
ACTGGTGAACCAGCACTCGCAGAAA 521 97 1021 Antisense
GGACATCTTTCAACTCTTATTTTGG 342 525 1093 Antisense
GGCGCAGGATAGATGTCATGCTCAC 209 543 1155 Antisense
GATGTCATGCTCACAATATTCCATT 466 409 1166 Antisense
GGACAACACTTATTTATTTGACCGA 637 525 1265 Antisense
AACGTCCATGAGATCGACCAACTTG 182 143 1291 Antisense
Sequence Source Affymetrix Proprietary Database