[Home] | [Total List]

[179173_at]

Description ZK930.5 /REP_DB=WormBase Gene ID /WP=CE06675 /TR=Q23667 /GB=CAA94173.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 16.5
(-1.7)
A 		4.2
(-3)
A 		9.3
(-2.4)
A 		59.4
(3)
A 		55
B 7.9
(-2)
A 		5.6
(-2.4)
A 		2.9
(-3)
A 		32
(3)
A 		29
C 13.9
(1.7)
A 		16.1
(3)
A 		6.1
(-3)
A 		9.3
(-1.1)
A 		10
avr 12.8
(-1.5) 		8.6
(-2.5) 		6.1
(-3) 		33.6
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 31.9
(1.6)
A 		3.9
(-3)
A 		40.2
(3)
A 		7.8
(-2.4)
A 		27.2
(0.9)
A 		32.8
(1.8)
A 		36
B 6.2
(-2.6)
A 		3.8
(-3)
A 		20.4
(-0.4)
A 		5.9
(-2.7)
A 		41.7
(3)
A 		26.2
(0.5)
A 		38
C 13.4
(-2)
A 		29.5
(0.9)
A 		7.9
(-3)
A 		36
(2)
A 		34.4
(1.7)
A 		41.4
(3)
A 		34
avr 17.2
(-1.7) 		12.4
(-3) 		22.8
(-0.2) 		16.6
(-1.9) 		34.4
(3) 		33.5
(2.8) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 6
(0.9)
A 		0.9
(-3)
A 		2.4
(-1.8)
A 		8.7
(3)
A 		8
B 2.5
(-1.2)
A 		1.4
(-2.3)
A 		0.7
(-3)
A 		6.8
(3)
A 		6
C 4.6
(3)
A 		4.6
(3)
A 		2.1
(-2)
A 		1.6
(-3)
A 		3
avr 4.4
(1.1) 		2.3
(-2.1) 		1.7
(-3) 		5.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.9
(0.6)
A 		1.4
(-3)
A 		8.8
(3)
A 		2
(-2.5)
A 		8.2
(2.5)
A 		8
(2.4)
A 		7
B 2.1
(-2.7)
A 		1.3
(-3)
A 		4.9
(-1.6)
A 		1.6
(-2.9)
A 		16.9
(3)
A 		9.8
(0.3)
A 		16
C 4.9
(-1.5)
A 		9
(0.6)
A 		2
(-3)
A 		7.2
(-0.4)
A 		11.1
(1.6)
A 		13.8
(3)
A 		12
avr 4.3
(-2.5) 		3.9
(-2.8) 		5.2
(-1.9) 		3.6
(-3) 		12.1
(3) 		10.5
(1.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179173_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3439
Sequence Type Exemplar sequence
Representative Public ID ZK930.5 NCBI
Target Description ZK930.5 /REP_DB=WormBase Gene ID /WP=CE06675 /TR=Q23667 /GB=CAA94173.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064136(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064136 NCBI Caenorhabditis elegans ZK930.5 (ZK930.5) mRNA, complete cds. 11/11 None
SNAP00000000320 ENSEMBL cdna:SNAP chromosome:CEL140:II:11880701:11886240:1 9/11 None
GENEFINDER00000000328 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11882518:11886240:1 10/11 None
ZK930.5 ENSEMBL cdna:known chromosome:CEL140:II:11882518:11883385:1 gene:ZK930.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11882514-11883382(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK930.5
Entrez Gene 191465 Entrez gene
SwissProt Q23667 EMBL-EBI
WormBase CE06675 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94173 Hypothetical protein ZK930.5 [Caenorhabditis elegans] ref|NP_496537.1| ZK930.5 [Caenorhabditis elegans] 1.0E-120
blast CAA94173 Hypothetical protein ZK930.5 [Caenorhabditis elegans] ref|NP_496537.1| ZK930.5 [Caenorhabditis elegans] 1.0E-110
blast CAA94173 Hypothetical protein ZK930.5 [Caenorhabditis elegans] ref|NP_496537.1| ZK930.5 [Caenorhabditis elegans] 1.0E-93
blast CAA94174 Hypothetical protein ZK930.6 [Caenorhabditis elegans] ref|NP_496538.1| ZK930.6 [Caenorhabditis elegans] 8.0E-92
blast CAA94174 Hypothetical protein ZK930.6 [Caenorhabditis elegans] ref|NP_496538.1| ZK930.6 [Caenorhabditis elegans] 5.0E-82
blast T34042 hypothetical protein F43E2.10 - Caenorhabditis elegans 1.0E-12
blast NP_872059 F14D2.8 [Caenorhabditis elegans] gb|AAQ65205.2| Hypothetical protein F14D2.8 [Caenorhabditis elegans] 8.0E-11
Sequence
Target Sequence 
>C. ELEGANS:179173_AT
gaatcaaattggtgcgacttgccgccagagttcaagcaacagtgcattcaaaaaatgccc
attactgaggaaagagatcttgtggatttgactaaatttcacctgagaaaagttgaaatt
gattcgaatagaattaagttagaggaagcaggcgatgattatctaaacctggatattgaa
ctgaattatcgggataatcgcatcgaaactcacatgattccgttgctcgattacattttc
aaaggcggaatcattaaaaagttgcaaatttccgacacgaatttcgaccgaaataaggaa
actatcatcaaaaagatgactccgatgctgcaagaacgtgttcttcaagtgaaaaagatc
attttaactttcacgaataacgctcgttctcaatttttgttgtcaaaatgcgatgagaga
tatctagaagtggttgagctcttcgattggtatgatagttttggcatcgtcggacttccg
attaagtttattgctaatgacgcagtgattggaacagattatcgtttttatacttttgat
caagaagaaattggatctagcccacgaaaaattcgcagatcgtgttgtgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCAAATTGGTGCGACTTGCCGC 322 327 31 Antisense
GAAACTCACATGATTCCGTTGCTCG 690 355 235 Antisense
GATTCCGTTGCTCGATTACATTTTC 375 433 246 Antisense
AAAGTTGCAAATTTCCGACACGAAT 52 121 288 Antisense
AAGATGACTCCGATGCTGCAAGAAC 569 155 343 Antisense
AACTTTCACGAATAACGCTCGTTCT 303 117 396 Antisense
ACGCTCGTTCTCAATTTTTGTTGTC 530 91 410 Antisense
GTGGTTGAGCTCTTCGATTGGTATG 316 489 460 Antisense
GATAGTTTTGGCATCGTCGGACTTC 22 425 484 Antisense
GAAGAAATTGGATCTAGCCCACGAA 244 339 574 Antisense
AAAAATTCGCAGATCGTGTTGTGTA 609 129 597 Antisense
Sequence Source Affymetrix Proprietary Database