[Home] | [Total List]

[179172_at]

Description F28B1.6 /REP_DB=WormBase Gene ID /WP=CE15918 /TR=O45416 /GB=CAB04213.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.6
(2.7)
A 		6.8
(3)
A 		5.6
(1.2)
A 		2.8
(-3)
A 		4
B 2.5
(-3)
A 		10.6
(3)
A 		6.3
(-0.2)
A 		4.9
(-1.2)
A 		8
C 4.6
(-1.9)
A 		2.8
(-3)
A 		4.7
(-1.8)
A 		12.2
(3)
A 		9
avr 4.6
(-3) 		6.7
(3) 		5.5
(-0.4) 		6.6
(2.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.1
(-0.2)
A 		5.7
(-1)
A 		5
(-1.4)
A 		9.8
(1.2)
A 		13
(3)
A 		2.1
(-3)
A 		11
B 4.4
(-0.1)
A 		1.9
(-2.4)
A 		2.4
(-2)
A 		7.7
(3)
A 		1.3
(-3)
A 		1.3
(-3)
A 		6
C 1.4
(-2.9)
A 		2.1
(-2)
A 		1.9
(-2.3)
A 		6.3
(3)
A 		2.1
(-2)
A 		1.3
(-3)
A 		5
avr 4.3
(-0.4) 		3.2
(-1.5) 		3.1
(-1.6) 		7.9
(3) 		5.5
(0.7) 		1.6
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.4
(3)
A 		1.5
(0.3)
A 		1.5
(0.3)
A 		0.4
(-3)
A 		2
B 0.8
(-3)
A 		2.6
(3)
A 		1.5
(-0.7)
A 		1.1
(-2)
A 		2
C 1.5
(0.2)
A 		0.8
(-3)
A 		1.6
(0.7)
A 		2.1
(3)
A 		1
avr 1.6
(3) 		1.6
(3) 		1.5
(1.5) 		1.2
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.3
(-1.6)
A 		2
(-0.4)
A 		1.1
(-1.9)
A 		2.5
(0.5)
A 		3.9
(3)
A 		0.5
(-3)
A 		3
B 1.5
(1)
A 		0.6
(-2.6)
A 		0.6
(-2.6)
A 		2
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		2
C 0.5
(-2.3)
A 		0.6
(-1.7)
A 		0.5
(-2.3)
A 		1.3
(3)
A 		0.7
(-1)
A 		0.4
(-3)
A 		1
avr 1.1
(-0.4) 		1.1
(-0.4) 		0.7
(-2.1) 		1.9
(3) 		1.7
(2.1) 		0.5
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179172_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14414
Sequence Type Exemplar sequence
Representative Public ID F28B1.6 NCBI
Target Description F28B1.6 /REP_DB=WormBase Gene ID /WP=CE15918 /TR=O45416 /GB=CAB04213.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074920
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000006329 ENSEMBL cdna:SNAP chromosome:CEL140:V:17062909:17065673:1 11/11 None
GENEFINDER00000006334 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17064467:17069049:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17063180-17065673(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE11306 Hypothetical protein F28B1.8 [Caenorhabditis elegans] ref|NP_001023867.1| Serpentine Receptor, class H family member (srh-255) [Caenorhabditis elegans] 1.0E-177
blast CAB04213 Hypothetical protein F28B1.6 [Caenorhabditis elegans] ref|NP_507321.2| Serpentine Receptor, class I family member (sri-66) [Caenorhabditis elegans] 1.0E-167
blast CAB04208 Hypothetical protein F28B1.1 [Caenorhabditis elegans] ref|NP_507316.1| F28B1.1 [Caenorhabditis elegans] 1.0E-105
blast CAB04208 Hypothetical protein F28B1.1 [Caenorhabditis elegans] ref|NP_507316.1| F28B1.1 [Caenorhabditis elegans] 1.0E-104
blast CAB04209 Hypothetical protein F28B1.2 [Caenorhabditis elegans] ref|NP_507317.1| F28B1.2 [Caenorhabditis elegans] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.4E-50
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.6E-69
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000006329 7 13-35,50-72,79-101,135-157,191-213,243-265,278-300
GENEFINDER00000006334 12 356-378,382-404,425-444,484-506,527-549,592-614,634-656,671-693,714-733,773-795,816-838,853-875
Sequence
Target Sequence 
>C. ELEGANS:179172_AT
tcgctgactcgtacagctgcgactgcccgcgaattctatctgacggccgtacgggttttg
agagccgaaatccatcggtcacaaaccaatgtgactttttcaaaggaacatgcatgcaaa
atactgaaattccgtttttgcacaccactaatacaaatccagtgaacagtggggcaggtg
ccggcgcacttggttcagaatttgacgatctgcgttgtgtgaagacaggagacgagttta
gttggtattttgcaaatttgaaattacaagatgtaagtatgcactgtggcaccaacacag
cagtattcggcgaggaaacatatctgacttgcggagtttttcaagtcatcaacaaattgg
aagacttaaaatggtatcatcaagttggagcatactcgaccgcacaggttggaatcagtt
catggacaccggcgtttgagttcgagattacttgtgaagatgggtttaagccagttgtgt
tcagtgagaacaatccgccaattgagatccccgactctgtaccaactatcaaatgcacct
acaatcctatggccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCTGACTCGTACAGCTGCGACTG 709 595 1334 Antisense
CTGCCCGCGAATTCTATCTGACGGC 191 237 1356 Antisense
ACTGAAATTCCGTTTTTGCACACCA 268 95 1456 Antisense
CCGGCGCACTTGGTTCAGAATTTGA 46 265 1514 Antisense
GGCACCAACACAGCAGTATTCGGCG 163 535 1621 Antisense
CAAGTTGGAGCATACTCGACCGCAC 325 183 1714 Antisense
GAATCAGTTCATGGACACCGGCGTT 307 327 1745 Antisense
GACACCGGCGTTTGAGTTCGAGATT 482 365 1758 Antisense
GAACAATCCGCCAATTGAGATCCCC 176 353 1821 Antisense
CCCGACTCTGTACCAACTATCAAAT 396 261 1843 Antisense
AATGCACCTACAATCCTATGGCCAA 403 165 1865 Antisense
Sequence Source Affymetrix Proprietary Database