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[179170_at]

Description C55A1.8 /REP_DB=WormBase Gene ID /WP=CE08994 /TR=O17710 /GB=CAB04004.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 17      6grp_cgc > 55      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 23.5
(-3)
A 		29.9
(-1.9)
A 		35.4
(-1)
A 		59.1
(3)
P 		36
B 19.3
(-3)
A 		50.3
(1.2)
A 		39.7
(-0.2)
A 		63.1
(3)
P 		44
C 13.6
(-2.9)
A 		13
(-3)
A 		22.5
(-1.9)
A 		66.6
(3)
P 		54
avr 18.8
(-3) 		31.1
(-1.3) 		32.5
(-1.1) 		62.9
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 38.2
(2.5)
A 		7.1
(-2.3)
A 		41.3
(3)
A 		2.4
(-3)
A 		8.2
(-2.1)
A 		31.1
(1.4)
A 		39
B 6.3
(-3)
A 		32.7
(2.4)
A 		21.5
(0.1)
A 		35.9
(3)
M 		18.7
(-0.5)
A 		20.8
(-0.1)
M 		30
C 4.3
(-3)
A 		50
(3)
P 		25.9
(-0.2)
A 		23.4
(-0.5)
A 		22.2
(-0.6)
A 		30
(0.4)
P 		46
avr 16.3
(-3) 		29.9
(3) 		29.6
(2.9) 		20.6
(-1.1) 		16.4
(-3) 		27.3
(1.9) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8.6
(1.5)
A 		6.5
(-3)
A 		9.3
(3)
A 		8.6
(1.5)
P 		3
B 6.1
(-3)
A 		12.4
(2.2)
A 		9.2
(-0.5)
A 		13.4
(3)
P 		7
C 4.5
(-2.4)
A 		3.7
(-3)
A 		7.8
(0.3)
A 		11.2
(3)
P 		8
avr 6.4
(-3) 		7.5
(-1.6) 		8.8
(0.1) 		11.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7
(1.6)
A 		2.5
(-1.6)
A 		9
(3)
A 		0.6
(-3)
A 		2.5
(-1.6)
A 		7.6
(2)
A 		8
B 2.2
(-3)
A 		10.9
(3)
A 		5.2
(-0.9)
A 		9.5
(2)
M 		7.6
(0.7)
A 		7.8
(0.9)
M 		9
C 1.6
(-3)
A 		15.3
(3)
P 		6.6
(-0.8)
A 		4.7
(-1.6)
A 		7.2
(-0.5)
A 		10
(0.7)
P 		14
avr 3.6
(-3) 		9.6
(3) 		6.9
(0.3) 		4.9
(-1.7) 		5.8
(-0.8) 		8.5
(1.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179170_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12552
Sequence Type Exemplar sequence
Representative Public ID C55A1.8 NCBI
Target Description C55A1.8 /REP_DB=WormBase Gene ID /WP=CE08994 /TR=O17710 /GB=CAB04004.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074493(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074493 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-42) (sru-42) mRNA, complete cds. 11/11 None
C55A1.8 ENSEMBL cdna:known chromosome:CEL140:V:15653051:15654997:1 gene:C55A1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15652156-15654997(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-42
Ensembl C55A1.8
Entrez Gene 183829 Entrez gene
WormBase CE34533 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04004 Hypothetical protein C55A1.8 [Caenorhabditis elegans] ref|NP_506894.2| Serpentine Receptor, class U family member (sru-42) [Caenorhabditis elegans] 0.0
blast CAE64237 Hypothetical protein CBG08873 [Caenorhabditis briggsae] 2.0E-61
blast CAA96664 Hypothetical protein R07B5.4 [Caenorhabditis elegans] ref|NP_505538.1| Serpentine Receptor, class U family member (sru-38) [Caenorhabditis elegans] 2.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506894.2 6 25-47,117-139,152-174,205-227,256-278,283-305
C55A1.8 6 25-47,117-139,152-174,205-227,256-278,283-305
Sequence
Target Sequence 
>C. ELEGANS:179170_AT
gcagcggttttgtactccagaaatcaaaaatctatggaaaaaattatactttctgtaatt
tattttataattttcattggtttcgtggcagctttacctcatgttcaggctcctgccgcc
tgcctacaagctttggaaccgtatccatttggttcaatacttataatttccgagtggttt
ttgtataacatgaaaaatgtagcacttggtaacatgttgttcagtgcgtcagtcacatgc
acaattataatgctgaatgctcttgtggttaagaaaattagatccagaaagtttttaagc
acacaaaacgtctcgacacaaaatgcaaaagttgaaaaaacgctctcccggactatgatt
attttacttattccaatgactttcaatctttttgtctcgatcggcgagctcttccaaatc
ggaaatttctcgtatattctatttcttcgtccactatttttggacgcccgagttcatatc
gtaacttgctatttctatttcactcatcctgtattcaagaagaagcttttcacttcccca
aattcagtatcgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCGGTTTTGTACTCCAGAAATC 658 313 514 Antisense
TTCATTGGTTTCGTGGCAGCTTTAC 479 687 586 Antisense
GCAGCTTTACCTCATGTTCAGGCTC 145 313 601 Antisense
AACATGTTGTTCAGTGCGTCAGTCA 603 137 724 Antisense
AAAAACGCTCTCCCGGACTATGATT 429 129 849 Antisense
TCAATCTTTTTGTCTCGATCGGCGA 110 633 896 Antisense
TATATTCTATTTCTTCGTCCACTAT 458 661 946 Antisense
TGGACGCCCGAGTTCATATCGTAAC 677 545 974 Antisense
GTAACTTGCTATTTCTATTTCACTC 71 463 994 Antisense
CTATTTCACTCATCCTGTATTCAAG 142 225 1008 Antisense
TCACTTCCCCAAATTCAGTATCGCA 397 627 1043 Antisense
Sequence Source Affymetrix Proprietary Database