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[179168_at]

Description F14F8.4 /REP_DB=WormBase Gene ID /WP=CE18588 /TR=Q9XU33 /GB=CAB07189.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 23      6grp_cgc > 98      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 49.1
(1)
A 		13.8
(-2.3)
A 		6.1
(-3)
A 		70.3
(3)
A 		64
B 27.6
(3)
A 		9.4
(-1.9)
A 		15.8
(-0.2)
A 		5.2
(-3)
A 		22
C 37.1
(3)
A 		23.5
(-0.2)
A 		25.2
(0.2)
A 		11.3
(-3)
A 		26
avr 37.9
(3) 		15.6
(-3) 		15.7
(-3) 		28.9
(0.6) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 10.9
(-2.6)
A 		8.6
(-2.9)
A 		52.1
(3)
A 		8.8
(-2.9)
A 		41.8
(1.6)
A 		8.1
(-3)
A 		44
B 5.1
(-2.9)
A 		29.9
(2.6)
A 		9.8
(-1.9)
A 		4.6
(-3)
A 		31.8
(3)
A 		5.8
(-2.7)
A 		27
C 22.8
(3)
A 		7.9
(-1.2)
A 		10.3
(-0.5)
A 		16.5
(1.2)
A 		20.7
(2.4)
A 		1.3
(-3)
A 		22
avr 12.9
(-1.2) 		15.5
(-0.6) 		24.1
(1.3) 		10
(-1.9) 		31.4
(3) 		5.1
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17.9
(3)
A 		3
(-2.5)
A 		1.6
(-3)
A 		10.3
(0.2)
A 		16
B 8.8
(3)
A 		2.3
(-2.1)
A 		3.7
(-1)
A 		1.1
(-3)
A 		8
C 12.3
(3)
A 		6.8
(-0.2)
A 		8.8
(1)
A 		1.9
(-3)
A 		10
avr 13
(3) 		4
(-3) 		4.7
(-2.5) 		4.4
(-2.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2
(-3)
A 		3
(-2.4)
A 		11.3
(2.3)
A 		2.2
(-2.9)
A 		12.6
(3)
A 		2
(-3)
A 		11
B 1.8
(-2.7)
A 		10
(1.5)
A 		2.4
(-2.4)
A 		1.2
(-3)
A 		12.9
(3)
A 		2.1
(-2.5)
A 		12
C 8.4
(3)
A 		2.4
(-1.5)
A 		2.6
(-1.4)
A 		3.3
(-0.8)
A 		6.7
(1.7)
A 		0.4
(-3)
A 		8
avr 4.1
(-1.3) 		5.1
(-0.7) 		5.4
(-0.5) 		2.2
(-2.5) 		10.7
(3) 		1.5
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179168_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14361
Sequence Type Exemplar sequence
Representative Public ID F14F8.4 NCBI
Target Description F14F8.4 /REP_DB=WormBase Gene ID /WP=CE18588 /TR=Q9XU33 /GB=CAB07189.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074821(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074821 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-103) (srz-103) mRNA, complete cds. 11/11 None
F14F8.4 ENSEMBL cdna:known chromosome:CEL140:V:16680205:16681919:-1 gene:F14F8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16680204-16681919(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srz-103
Ensembl F14F8.4
Entrez Gene 184478 Entrez gene
SwissProt Q9XU33 EMBL-EBI
WormBase CE37503 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07189 Hypothetical protein F14F8.4 [Caenorhabditis elegans] ref|NP_507222.2| Serpentine Receptor, class Z family member (srz-103) [Caenorhabditis elegans] 1.0E-156
blast CAH60765 Hypothetical protein F14F8.13 [Caenorhabditis elegans] ref|NP_001023801.1| Serpentine Receptor, class Z family member (srz-102) [Caenorhabditis elegans] 3.0E-67
blast CAA20970 Hypothetical protein Y102A5C.33 [Caenorhabditis elegans] ref|NP_507299.1| Serpentine Receptor, class Z family member (srz-95) [Caenorhabditis elegans] 2.0E-61
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507222.2 8 20-42,55-77,87-109,116-136,151-173,180-211,231-253,260-282
F14F8.4 8 20-42,55-77,87-109,116-136,151-173,180-211,231-253,260-282
Sequence
Target Sequence 
>C. ELEGANS:179168_AT
atacctgttcccattcaattctgtatattcacaaaattctatacacaagtatgtcaggca
tttttctgtagctattgttttaaaagatgttctatttttttcacctttgttagtgcattt
ttgcttctttcctattagcgacgaagttggtctcattcttttaatagtgtatatgggaat
attcttaattttgaacttggtgatttccattctaactccatttgtctatatccctgttat
cttgaacatgaagcaaaatggccacctacactcacagcaacacatttatttacaaaatta
tattttccttcagagcttactagttttgctttccaaattggtctctgttccatcttttct
ttcatacatagaaatcagaaacccatggtcgtatttagtaataatatctattggcgatgc
ggtcactatcccactgataattcaactttcgtacttgagatgtaatgtaaacgaagtgat
taccctattccggtcattcaaccttggcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACCTGTTCCCATTCAATTCTGTA 610 21 348 Antisense
GATGTTCTATTTTTTTCACCTTTGT 226 409 433 Antisense
TTGCTTCTTTCCTATTAGCGACGAA 551 703 468 Antisense
GCGACGAAGTTGGTCTCATTCTTTT 504 289 485 Antisense
GATTTCCATTCTAACTCCATTTGTC 6 429 549 Antisense
TCCATTTGTCTATATCCCTGTTATC 181 591 564 Antisense
TGAAGCAAAATGGCCACCTACACTC 272 575 596 Antisense
TCTGTTCCATCTTTTCTTTCATACA 203 609 691 Antisense
ATCTATTGGCGATGCGGTCACTATC 701 31 753 Antisense
GAAGTGATTACCCTATTCCGGTCAT 498 335 820 Antisense
ATTCCGGTCATTCAACCTTGGCAAA 314 7 834 Antisense
Sequence Source Affymetrix Proprietary Database