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[179167_at]

Description M05D6.6 /REP_DB=WormBase Gene ID /WP=CE03504 /TR=Q21525 /GB=CAA91415.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 65      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 85      6grp_total > 56      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2669
1 2 3 4 range
A 791.3
(-3)
P 		1183.8
(-2.1)
P 		860.9
(-2.8)
P 		3339.5
(3)
P 		2548
B 965.5
(-2.3)
P 		1023.7
(-2.2)
P 		670.2
(-3)
P 		3224.5
(3)
P 		2554
C 1090
(-2.4)
P 		891.6
(-3)
P 		889.5
(-3)
P 		2755.2
(3)
P 		1866
avr 948.9
(-2.6) 		1033
(-2.4) 		806.9
(-3) 		3106.4
(3) 		2300

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 887
1 2 3 4 5 6 range
A 586.5
(-1.5)
P 		703.1
(-0.4)
P 		1090.8
(3)
P 		608.7
(-1.3)
P 		415.3
(-3)
P 		952.4
(1.8)
P 		676
B 727.4
(-2)
P 		806.2
(-1.3)
P 		833
(-1.1)
P 		611.3
(-3)
P 		674.5
(-2.5)
P 		1302.2
(3)
P 		691
C 651.5
(-1.9)
P 		740.4
(-0.9)
P 		743.8
(-0.8)
P 		741.2
(-0.9)
P 		561.3
(-3)
P 		1065.4
(3)
P 		504
avr 655.1
(-1.9) 		749.9
(-0.8) 		889.2
(0.7) 		653.7
(-1.9) 		550.4
(-3) 		1106.7
(3) 		556
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 532
1 2 3 4 range
A 288.1
(-1.6)
P 		257
(-2.3)
P 		225
(-3)
P 		488.8
(3)
P 		264
B 307.9
(-1.3)
P 		252.8
(-1.9)
P 		155.3
(-3)
P 		687.1
(3)
P 		532
C 360.8
(0)
P 		256.3
(-3)
P 		310
(-1.5)
P 		464.6
(3)
P 		208
avr 318.9
(-1.3) 		255.4
(-2.5) 		230.1
(-3) 		546.8
(3) 		317

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 378
1 2 3 4 5 6 range
A 108.1
(-3)
P 		250
(3)
P 		237.6
(2.5)
P 		154.4
(-1)
P 		125.3
(-2.3)
P 		231.9
(2.2)
P 		142
B 253.1
(-1.3)
P 		268.3
(-1)
P 		202.3
(-2.3)
P 		161.9
(-3)
P 		274
(-0.9)
P 		485.6
(3)
P 		324
C 241.5
(-0.3)
P 		225.9
(-0.8)
P 		189.3
(-1.8)
P 		149.1
(-3)
P 		181.6
(-2.1)
P 		356.7
(3)
P 		208
avr 200.9
(-1.6) 		248.1
(-0.3) 		209.7
(-1.4) 		155.1
(-3) 		193.6
(-1.9) 		358.1
(3) 		203
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179167_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3558
Sequence Type Exemplar sequence
Representative Public ID M05D6.6 NCBI
Target Description M05D6.6 /REP_DB=WormBase Gene ID /WP=CE03504 /TR=Q21525 /GB=CAA91415.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063391(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063391 NCBI Caenorhabditis elegans M05D6.6 (M05D6.6) mRNA, complete cds. 11/11 None
SNAP00000015531 ENSEMBL cdna:SNAP chromosome:CEL140:II:8482528:8483186:-1 11/11 None
GENEFINDER00000015546 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8482528:8483186:-1 11/11 None
M05D6.6.2 ENSEMBL cdna:known chromosome:CEL140:II:8482298:8483224:-1 gene:M05D6.6 11/11 None
M05D6.6.1 ENSEMBL cdna:known chromosome:CEL140:II:8482298:8483794:-1 gene:M05D6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8482524-8483183(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M05D6.6
Entrez Gene 187453 Entrez gene
SwissProt Q21525 EMBL-EBI
WormBase CE03504 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91415 Hypothetical protein M05D6.6 [Caenorhabditis elegans] ref|NP_495792.1| M05D6.6 [Caenorhabditis elegans] 5.0E-75
blast CAE57631 Hypothetical protein CBG00616 [Caenorhabditis briggsae] 1.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495792.1 1 123-145
M05D6.6.2 1 123-145
M05D6.6.1 1 123-145
SNAP00000015531 1 123-145
GENEFINDER00000015546 1 123-145
Sequence
Target Sequence 
>C. ELEGANS:179167_AT
tgcggaggacagcaagcctcatcgcgaatgactccggctgtttgtatggcaattcgaaga
tttgatccgctggaagctaaaatggctcaaaaaaaggcccaaattatcgaacaacaacaa
ggccaggaggttgaccaacatcgtgtgacctacgcaaccaaagacgatttcaaacattct
gttcaagattctcgttttactggagcagccgattcagaaactggacaagtacctacaaag
tggcagagaaaatttttggtgattaccaaactttacccgtctgccgctgatattccacca
tatgttcaccatggaacaatgaacagaatgcacgacagaatgcgagtagtcttcattgtc
actgcttcacttttcttcttttcaacattctacatcgctgaaagagcaatggctcagaaa
atcgcacgtgatcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGGAGGACAGCAAGCCTCATCGC 59 583 34 Antisense
GAATGACTCCGGCTGTTTGTATGGC 511 331 59 Antisense
GAAGATTTGATCCGCTGGAAGCTAA 688 337 89 Antisense
AGGCCCAAATTATCGAACAACAACA 183 1 128 Antisense
GGTTGACCAACATCGTGTGACCTAC 10 509 162 Antisense
GTGTGACCTACGCAACCAAAGACGA 304 443 176 Antisense
GATTCTCGTTTTACTGGAGCAGCCG 77 433 220 Antisense
GGAGCAGCCGATTCAGAAACTGGAC 81 521 235 Antisense
GAGTAGTCTTCATTGTCACTGCTTC 453 397 377 Antisense
TCTTCTTTTCAACATTCTACATCGC 219 617 407 Antisense
GGCTCAGAAAATCGCACGTGATCGT 143 539 444 Antisense
Sequence Source Affymetrix Proprietary Database