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[179165_at]

Description W04A4.2 /REP_DB=WormBase Gene ID /WP=CE14570 /TR=O45888 /GB=CAB04896.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 16.5
(-1.7)
A 		10
(-3)
A 		39.3
(3)
A 		25.5
(0.2)
A 		29
B 19.8
(-1.1)
A 		8.9
(-2.5)
A 		4.7
(-3)
A 		52.5
(3)
A 		48
C 15.3
(-1.2)
A 		7.7
(-3)
A 		8.6
(-2.8)
A 		32.4
(3)
A 		25
avr 17.2
(-1.2) 		8.9
(-3) 		17.5
(-1.2) 		36.8
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 42.4
(3)
A 		31.3
(1)
A 		22.4
(-0.6)
A 		8.6
(-3)
A 		34.5
(1.6)
A 		42.2
(3)
A 		34
B 29
(0.1)
A 		11
(-3)
A 		12.2
(-2.8)
A 		23.6
(-0.9)
A 		46.3
(3)
A 		37
(1.4)
A 		35
C 10
(-2.5)
A 		54
(1.5)
A 		3.9
(-3)
A 		7.4
(-2.7)
A 		40.3
(0.3)
A 		70.8
(3)
A 		67
avr 27.1
(-0.7) 		32.1
(0.1) 		12.8
(-3) 		13.2
(-2.9) 		40.4
(1.5) 		50
(3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6
(-0.2)
A 		2.2
(-3)
A 		10.3
(3)
A 		3.7
(-1.9)
A 		8
B 6.3
(0.1)
A 		2.2
(-2.3)
A 		1.1
(-3)
A 		11.2
(3)
A 		10
C 5.1
(2.3)
A 		2.2
(-3)
A 		3
(-1.5)
A 		5.5
(3)
A 		3
avr 5.8
(1.7) 		2.2
(-3) 		4.8
(0.4) 		6.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 7.8
(0.8)
A 		11.1
(3)
A 		4.9
(-1.2)
A 		2.2
(-3)
A 		10.4
(2.5)
A 		10.3
(2.5)
A 		9
B 10.1
(-0.3)
A 		3.7
(-2.7)
A 		3
(-3)
A 		6.2
(-1.8)
A 		18.8
(3)
A 		13.8
(1.1)
A 		16
C 3.7
(-2.3)
A 		16.5
(1.1)
A 		1
(-3)
A 		1.5
(-2.9)
A 		13
(0.2)
A 		23.7
(3)
A 		23
avr 7.2
(-1) 		10.4
(0.4) 		3
(-3) 		3.3
(-2.9) 		14.1
(2.2) 		15.9
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179165_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.657
Sequence Type Exemplar sequence
Representative Public ID W04A4.2 NCBI
Target Description W04A4.2 /REP_DB=WormBase Gene ID /WP=CE14570 /TR=O45888 /GB=CAB04896.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060998(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060998 NCBI Caenorhabditis elegans W04A4.2 (W04A4.2) mRNA, complete cds. 10/11 None
W04A4.2 ENSEMBL cdna:known chromosome:CEL140:I:13691286:13692303:1 gene:W04A4.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016128 8/11 Cross Hyb Matching Probes None
GENEFINDER00000016150 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13691216-13693678(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04A4.2
Entrez Gene 189178 Entrez gene
SwissProt O45888 EMBL-EBI
WormBase CE36957 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04896 Hypothetical protein W04A4.2 [Caenorhabditis elegans] ref|NP_493399.2| W04A4.2 [Caenorhabditis elegans] 1.0E-130
Sequence
Target Sequence 
>C. ELEGANS:179165_AT
tttgggcaatattttccggtcttcacaacgcgagcgtccccggcagctgactgcgattgt
gctaattacctgacaacaccttccgatgtaagagaacacactattcattacaaggactat
catcgcctgattgcacattcaaatgtgacaaatattacaagaacacagtcatataatgga
tgcgtgagaagacatgactgtaatatcgaagatgggaagacccttcttctgttccataat
gatcaagtttaccagtcttcttccggcgatttccagtttgaatgtcctgactacacttgg
agtgtttctgagaactgggtgcctgcataccagctattctatctcatggcagtttgtgtt
caagatttgaaagaaaatttagaatctcctgcaccgaccacctgccaatgtgaacacttt
tggtcggatactgctagcattgaaggatggttttcaggtatcgcgaattcaactttcgga
cttttatgtgatttcatgaattgtttaacagcttctttcctactcgaacttttcccaaat
gtcgcattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGGGCAATATTTTCCGGTCTTCA 233 667 79 Antisense
CCCCGGCAGCTGACTGCGATTGTGC 185 261 116 Antisense
TGCTAATTACCTGACAACACCTTCC 561 579 138 Antisense
ATCATCGCCTGATTGCACATTCAAA 30 31 197 Antisense
ACCCTTCTTCTGTTCCATAATGATC 607 89 298 Antisense
TTCTTCCGGCGATTTCCAGTTTGAA 64 691 336 Antisense
CTGAGAACTGGGTGCCTGCATACCA 436 239 386 Antisense
TGCATACCAGCTATTCTATCTCATG 417 579 402 Antisense
CGACCACCTGCCAATGTGAACACTT 515 249 473 Antisense
GAACACTTTTGGTCGGATACTGCTA 637 351 490 Antisense
GAACTTTTCCCAAATGTCGCATTCA 668 349 604 Antisense
Sequence Source Affymetrix Proprietary Database