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[179162_at] 7TM chemoreceptor, srw family

Description F40D4.8 /REP_DB=WormBase Gene ID /WP=CE19842 /TR=Q9XV24 /GB=CAB04370.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 43      6grp_cgc > 71      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 41.4
(-3)
A 		57.4
(3)
A 		50
(0.2)
A 		47.5
(-0.7)
A 		16
B 46.7
(1.1)
M 		56
(3)
P 		38
(-0.6)
A 		26.1
(-3)
A 		30
C 33.2
(-3)
A 		50.1
(1.6)
A 		38.3
(-1.6)
M 		55.2
(3)
A 		22
avr 40.4
(-3) 		54.5
(3) 		42.1
(-2.3) 		42.9
(-1.9) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 52.5
(3)
A 		33.2
(-1.1)
A 		44.7
(1.3)
A 		24.5
(-3)
A 		30.7
(-1.7)
A 		27.2
(-2.4)
A 		28
B 29.8
(-0.8)
A 		48
(1.3)
A 		62.8
(3)
M 		56.9
(2.3)
A 		25.6
(-1.3)
M 		11.3
(-3)
A 		52
C 35.8
(-0.5)
A 		62.3
(3)
P 		33.3
(-0.9)
A 		17.3
(-3)
A 		24.4
(-2.1)
A 		33.7
(-0.8)
A 		45
avr 39.4
(0.9) 		47.8
(3) 		46.9
(2.8) 		32.9
(-0.8) 		26.9
(-2.3) 		24.1
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 15.1
(3)
A 		12.4
(1)
A 		13.1
(1.5)
A 		7
(-3)
A 		8
B 14.9
(3)
M 		13.8
(2.3)
P 		8.8
(-0.9)
A 		5.6
(-3)
A 		9
C 11
(-1)
A 		14.4
(3)
A 		13.4
(1.8)
M 		9.3
(-3)
A 		5
avr 13.7
(3) 		13.5
(2.8) 		11.8
(1.2) 		7.3
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 9.7
(0.7)
A 		11.8
(3)
A 		9.7
(0.7)
A 		6.2
(-3)
A 		9.3
(0.3)
A 		6.6
(-2.6)
A 		6
B 10.4
(0.2)
A 		16
(3)
A 		15.3
(2.6)
M 		15.1
(2.5)
A 		10.4
(0.2)
M 		4.2
(-3)
A 		12
C 13.3
(0.8)
A 		19
(3)
P 		8.5
(-1.1)
A 		3.5
(-3)
A 		7.9
(-1.3)
A 		11.3
(0)
A 		16
avr 11.1
(-0.3) 		15.6
(3) 		11.2
(-0.2) 		8.3
(-2.3) 		9.2
(-1.7) 		7.4
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179162_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12839
Sequence Type Exemplar sequence
Representative Public ID F40D4.8 NCBI
Target Description F40D4.8 /REP_DB=WormBase Gene ID /WP=CE19842 /TR=Q9XV24 /GB=CAB04370.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074943(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074943 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-51) (srw-51) mRNA, complete cds. 11/11 None
F40D4.8 ENSEMBL cdna:known chromosome:CEL140:V:17172020:17173500:-1 gene:F40D4.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000026457 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17172019-17173500(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-51
Ensembl F40D4.8
Entrez Gene 185526 Entrez gene
SwissProt Q9XV24 EMBL-EBI
WormBase CE19842 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04370 Hypothetical protein F40D4.8 [Caenorhabditis elegans] ref|NP_507344.1| Serpentine Receptor, class W family member (srw-51) [Caenorhabditis elegans] 0.0
blast T23638 hypothetical protein M01B2.5 - Caenorhabditis elegans 2.0E-72
blast CAA18357 Hypothetical protein H24D24.1 [Caenorhabditis elegans] ref|NP_506996.1| Serpentine Receptor, class W family member (srw-59) [Caenorhabditis elegans] 1.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 6.4E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507344.1 7 20-42,55-77,106-128,149-171,213-235,261-282,302-321
F40D4.8 7 20-42,55-77,106-128,149-171,213-235,261-282,302-321
Sequence
Target Sequence 
>C. ELEGANS:179162_AT
gcacggaatccggattcttctcaccatctgcctaccgtacgcctgctactttatctatga
ctacacagctcactcgacaaccatctcagaaacctgggaactacctccagagtgtgccaa
cacctctgaacctgacacttatacgctttattataccgaatacgatgagtcaagcttcag
aatctcactttttattgatggaatcctgttcaagttgataccatcgatacttctaccatt
gttcacaatagttcttttgtatgaaatgaagaaaacgagaaaagtggcgacatctcgaag
ttttcaaaactcaaacagtaaagatcgatctacgaagctggtaacatttgtgacaattac
atttttactgtccaccgtcccattaggaatattatacattataaaaagtatttttcttca
atcactagttatttcaaactttgccaacaaactacaatccatttttgtactcatatcaat
tatcaatggaacattacattttcttatttgcttcttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACGGAATCCGGATTCTTCTCACC 408 315 456 Antisense
GTACGCCTGCTACTTTATCTATGAC 254 459 492 Antisense
TCTATGACTACACAGCTCACTCGAC 308 615 509 Antisense
TCACTCGACAACCATCTCAGAAACC 117 627 525 Antisense
TGGGAACTACCTCCAGAGTGTGCCA 632 553 550 Antisense
GAACCTGACACTTATACGCTTTATT 235 347 583 Antisense
GAGTCAAGCTTCAGAATCTCACTTT 607 399 622 Antisense
ACCATCGATACTTCTACCATTGTTC 402 87 675 Antisense
CAATTACATTTTTACTGTCCACCGT 339 179 809 Antisense
TGTCCACCGTCCCATTAGGAATATT 230 555 824 Antisense
TACATTTTCTTATTTGCTTCTTCAT 415 645 950 Antisense
Sequence Source Affymetrix Proprietary Database