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[179160_at]

Description T26H5.4 /REP_DB=WormBase Gene ID /WP=CE18292 /TR=O62385 /GB=CAB04855.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 06      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 18.5
(3)
A 		2.1
(-3)
A 		2.6
(-2.8)
A 		8.6
(-0.6)
A 		16
B 10.6
(-1)
A 		4.8
(-3)
A 		22.2
(3)
A 		20.8
(2.5)
A 		17
C 4.6
(-1.7)
A 		2.3
(-2.6)
A 		1.3
(-3)
A 		16.6
(3)
A 		15
avr 11.2
(1) 		3.1
(-3) 		8.7
(-0.2) 		15.3
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 6
(-3)
A 		9.9
(-2.6)
A 		33.6
(-0.1)
A 		62.4
(3)
A 		24.9
(-1)
A 		15.6
(-2)
A 		56
B 19.3
(-0.5)
A 		5.4
(-3)
A 		20
(-0.4)
A 		39
(3)
A 		32.6
(1.9)
P 		26.5
(0.8)
M 		34
C 21.8
(-2.2)
A 		9
(-3)
A 		39.7
(-1)
A 		99.6
(3)
P 		35
(-1.3)
P 		41.5
(-0.8)
A 		91
avr 15.7
(-2.2) 		8.1
(-3) 		31.1
(-0.7) 		67
(3) 		30.8
(-0.7) 		27.9
(-1) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 6.7
(3)
A 		0.5
(-3)
A 		0.7
(-2.8)
A 		1.3
(-2.2)
A 		6
B 3.4
(0.4)
A 		1.2
(-3)
A 		5.1
(3)
A 		4.4
(1.9)
A 		4
C 1.5
(-0.4)
A 		0.7
(-2.5)
A 		0.5
(-3)
A 		2.8
(3)
A 		2
avr 3.9
(3) 		0.8
(-3) 		2.1
(-0.5) 		2.8
(0.9) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.1
(-3)
A 		3.5
(-2)
A 		7.3
(-0.5)
A 		15.8
(3)
A 		7.5
(-0.4)
A 		3.8
(-1.9)
A 		15
B 6.7
(-0.4)
A 		1.8
(-3)
A 		4.9
(-1.4)
A 		10.3
(1.5)
A 		13.2
(3)
P 		9.9
(1.3)
M 		11
C 8.1
(-1.1)
A 		2.7
(-3)
A 		10.1
(-0.4)
A 		20
(3)
P 		11.3
(-0)
P 		13.9
(0.9)
A 		17
avr 5.3
(-1.8) 		2.7
(-3) 		7.4
(-0.8) 		15.4
(3) 		10.7
(0.8) 		9.2
(0.1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179160_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13002
Sequence Type Exemplar sequence
Representative Public ID T26H5.4 NCBI
Target Description T26H5.4 /REP_DB=WormBase Gene ID /WP=CE18292 /TR=O62385 /GB=CAB04855.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074442(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074442 NCBI Caenorhabditis elegans T26H5.4 (T26H5.4) mRNA, complete cds. 11/11 None
GENEFINDER00000015507 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15450225:15452992:-1 10/11 None
T26H5.4 ENSEMBL cdna:known chromosome:CEL140:V:15450225:15450723:-1 gene:T26H5.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015502 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15450224-15450723(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26H5.4
Entrez Gene 188957 Entrez gene
SwissProt O62385 EMBL-EBI
WormBase CE18292 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03410 Hypothetical protein T26H5.5 [Caenorhabditis elegans] emb|CAB04856.1| Hypothetical protein T26H5.5 [Caenorhabditis elegans] ref|NP_506844.1| Serpentine Receptor, class W family member (srw-33) [Caenorhabditis elegans] 3.0E-94
blast CAB04855 Hypothetical protein T26H5.4 [Caenorhabditis elegans] ref|NP_506843.1| T26H5.4 [Caenorhabditis elegans] 2.0E-27
blast CAE17807 Hypothetical protein F36D3.13 [Caenorhabditis elegans] ref|NP_001023883.1| Serpentine Receptor, class W family member (srw-34) [Caenorhabditis elegans] 3.0E-25
blast CAB05799 Hypothetical protein T08G3.10 [Caenorhabditis elegans] ref|NP_507166.2| Serpentine Receptor, class W family member (srw-35) [Caenorhabditis elegans] 1.0E-24
blast CAE18058 Hypothetical protein ZK285.2 [Caenorhabditis elegans] ref|NP_001024308.1| ZK285.2 [Caenorhabditis elegans] 2.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 7.6E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000015507 4 13-35,82-104,125-147,167-189
Sequence
Target Sequence 
>C. ELEGANS:179160_AT
aaattctatgttgatggttcgagtgacactacaaccagtgacatgacatctgcaatgtta
tctggtagtggagcagctgctgaaacagaaatgtcaagtgacaactctacgagtactggc
ggagctggtggtggtggaagtggagaagcgagcagtaaaacgttcaccactactaaaaag
aagcagaacatgaaatgttatgagtatgaagatggaaccaaagacgatggagctgtactc
aagccaggggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTCTATGTTGATGGTTCGAGTG 172 115 40 Antisense
GGTTCGAGTGACACTACAACCAGTG 273 501 55 Antisense
CTACAACCAGTGACATGACATCTGC 280 221 68 Antisense
CATCTGCAATGTTATCTGGTAGTGG 77 213 86 Antisense
GGTAGTGGAGCAGCTGCTGAAACAG 505 503 103 Antisense
ATGTCAAGTGACAACTCTACGAGTA 708 45 130 Antisense
ACGAGTACTGGCGGAGCTGGTGGTG 384 93 148 Antisense
GTGGAAGTGGAGAAGCGAGCAGTAA 104 491 173 Antisense
CGAGCAGTAAAACGTTCACCACTAC 383 245 188 Antisense
GACGATGGAGCTGTACTCAAGCCAG 128 379 262 Antisense
TGGAGCTGTACTCAAGCCAGGGGTC 549 545 267 Antisense
Sequence Source Affymetrix Proprietary Database