[Home] | [Total List]

[179158_at]

Description F47B8.6 /REP_DB=WormBase Gene ID /WP=CE10642 /TR=Q20520 /GB=CAB01195.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 44      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 47.2
(3)
A 		32.2
(0.7)
A 		17.8
(-1.5)
A 		7.8
(-3)
A 		39
B 43.9
(0.9)
A 		62.7
(3)
A 		44.7
(1)
A 		9.6
(-3)
A 		53
C 34.9
(-3)
M 		44.5
(-1.9)
A 		35.1
(-3)
A 		87.6
(3)
A 		53
avr 42
(1.1) 		46.5
(3) 		32.5
(-3) 		35
(-1.9) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 67
(3)
A 		58.1
(1.9)
P 		48.1
(0.7)
P 		50.8
(1.1)
P 		24.6
(-2.1)
A 		16.8
(-3)
A 		50
B 28.7
(-2.9)
A 		63.7
(3)
P 		53.4
(1.3)
A 		48.3
(0.4)
A 		62.6
(2.8)
A 		28.2
(-3)
A 		36
C 36.1
(-3)
A 		75.2
(3)
P 		57.7
(0.3)
A 		70.4
(2.3)
A 		63.9
(1.3)
A 		38.1
(-2.7)
A 		39
avr 43.9
(-0.4) 		65.7
(3) 		53.1
(1) 		56.5
(1.5) 		50.4
(0.6) 		27.7
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17.2
(3)
A 		7
(-0.8)
A 		4.7
(-1.7)
A 		1.1
(-3)
A 		16
B 14
(2.3)
A 		15.5
(3)
A 		10.4
(0.7)
A 		2.1
(-3)
A 		13
C 11.6
(-3)
M 		12.8
(-0.7)
A 		12.2
(-1.9)
A 		14.8
(3)
A 		3
avr 14.3
(3) 		11.8
(1.2) 		9.1
(-0.8) 		6
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 12.4
(0)
A 		20.7
(3)
P 		10.5
(-0.7)
P 		12.9
(0.2)
P 		7.4
(-1.8)
A 		4.1
(-3)
A 		17
B 10
(-3)
A 		21.2
(1.4)
P 		13
(-1.8)
A 		12.8
(-1.9)
A 		25.4
(3)
A 		10.5
(-2.8)
A 		15
C 13.4
(-2.6)
A 		23
(3)
P 		14.7
(-1.8)
A 		14.2
(-2.1)
A 		20.7
(1.7)
A 		12.7
(-3)
A 		10
avr 11.9
(-1.7) 		21.6
(3) 		12.7
(-1.3) 		13.3
(-1) 		17.8
(1.2) 		9.1
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179158_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13716
Sequence Type Exemplar sequence
Representative Public ID F47B8.6 NCBI
Target Description F47B8.6 /REP_DB=WormBase Gene ID /WP=CE10642 /TR=Q20520 /GB=CAB01195.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074151(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074151 NCBI Caenorhabditis elegans F47B8.6 (F47B8.6) mRNA, complete cds. 11/11 None
SNAP00000011440 ENSEMBL cdna:SNAP chromosome:CEL140:V:14331754:14332604:1 11/11 None
GENEFINDER00000011449 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14331754:14332604:1 11/11 None
F47B8.6 ENSEMBL cdna:known chromosome:CEL140:V:14331754:14332604:1 gene:F47B8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14331753-14332604(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B8.6
Entrez Gene 185898 Entrez gene
SwissProt Q20520 EMBL-EBI
WormBase CE10642 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01195 Hypothetical protein F47B8.6 [Caenorhabditis elegans] ref|NP_506552.1| F47B8.6 [Caenorhabditis elegans] 1.0E-121
blast CAE60919 Hypothetical protein CBG04636 [Caenorhabditis briggsae] 5.0E-95
blast CAE72712 Hypothetical protein CBG19949 [Caenorhabditis briggsae] 5.0E-93
Sequence
Target Sequence 
>C. ELEGANS:179158_AT
gaacttcttactacgtacaggccaattaaaattcttctccaacttgatcccaatctggga
aataactcatacaatggtagagtaaaaatcgattacgagttcacaggagaaacatcggag
atcaaaattcaaacatctagagattttcagtggacttctgtcagacttgccacgttttac
gatttcaatgaaggatgtcctgtgtatgcaagtgttgattgtgaaaactatgtccatgat
gccgaatcagagatactgactcttccattgggaaaccccctcactcctgaaactactgaa
aatggattctacattgaattagaatggactggacctataaatcctcagggagaaactact
ggactttatgcaattgatgaaagtactattgaagcaaatatgaaagatgggaatgctcat
aaagtatttccatgttatgagggaggagtttctgcaaagttctggctgactgtgataact
gatgaaagaactagagttgaaactaatatggatgacgctgggcacgaagaattcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTCTTACTACGTACAGGCCAA 517 347 19 Antisense
GGCCAATTAAAATTCTTCTCCAACT 256 545 38 Antisense
TTCTCCAACTTGATCCCAATCTGGG 411 691 53 Antisense
GTGGACTTCTGTCAGACTTGCCACG 140 491 168 Antisense
GACTTGCCACGTTTTACGATTTCAA 450 371 182 Antisense
GGATGTCCTGTGTATGCAAGTGTTG 234 515 211 Antisense
AAACTATGTCCATGATGCCGAATCA 556 127 243 Antisense
GAGATACTGACTCTTCCATTGGGAA 65 395 268 Antisense
GGACTGGACCTATAAATCCTCAGGG 510 517 344 Antisense
GGGAGGAGTTTCTGCAAAGTTCTGG 476 495 459 Antisense
GATGACGCTGGGCACGAAGAATTCG 95 407 529 Antisense
Sequence Source Affymetrix Proprietary Database