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[179157_at]

Description F32G8.1 /REP_DB=WormBase Gene ID /WP=CE05790 /TR=Q19975 /GB=CAA96645.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 10      6grp_cgc > 88      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 7.1
(-3)
A 		33.7
(-2)
A 		15.8
(-2.7)
A 		163.5
(3)
P 		156
B 45.8
(-2.5)
P 		45.5
(-2.5)
A 		41.2
(-3)
A 		93.1
(3)
P 		52
C 35.6
(-1.7)
A 		44.2
(-1.3)
A 		4.7
(-3)
A 		145.9
(3)
P 		141
avr 29.5
(-2.5) 		41.1
(-1.9) 		20.6
(-3) 		134.2
(3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 45.1
(0.5)
A 		28.4
(-3)
A 		44.4
(0.4)
A 		36
(-1.4)
P 		56.9
(3)
P 		33.8
(-1.9)
A 		29
B 27
(-2.1)
A 		27.1
(-2.1)
A 		23.9
(-3)
A 		35.5
(0.4)
A 		44.6
(3)
M 		29.2
(-1.5)
M 		21
C 51.7
(0.8)
P 		30
(-1.2)
A 		9.7
(-3)
A 		64.7
(1.9)
A 		76.6
(3)
P 		71.2
(2.5)
P 		67
avr 41.3
(-0.3) 		28.5
(-2.6) 		26
(-3) 		45.4
(0.5) 		59.4
(3) 		44.7
(0.4) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 2.6
(-3)
A 		7.3
(-1.7)
A 		4.1
(-2.6)
A 		23.9
(3)
P 		21
B 14.6
(-0)
P 		11.2
(-2)
A 		9.5
(-3)
A 		19.8
(3)
P 		10
C 11.8
(-0.3)
A 		12.7
(-0.1)
A 		1.6
(-3)
A 		24.6
(3)
P 		23
avr 9.7
(-1.4) 		10.4
(-1.2) 		5.1
(-3) 		22.8
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 8.3
(-2.9)
A 		10.1
(-1.7)
A 		9.7
(-2)
A 		9.1
(-2.4)
P 		17.2
(3)
P 		8.2
(-3)
A 		9
B 9.4
(-1.2)
A 		9
(-1.4)
A 		5.8
(-3)
A 		9.4
(-1.2)
A 		18.1
(3)
M 		10.9
(-0.5)
M 		12
C 19.2
(1.5)
P 		9.2
(-1.2)
A 		2.5
(-3)
A 		13
(-0.2)
A 		24.8
(3)
P 		23.8
(2.7)
P 		22
avr 12.3
(-0.3) 		9.4
(-1.5) 		6
(-3) 		10.5
(-1.1) 		20
(3) 		14.3
(0.6) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179157_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11469
Sequence Type Exemplar sequence
Representative Public ID F32G8.1 NCBI
Target Description F32G8.1 /REP_DB=WormBase Gene ID /WP=CE05790 /TR=Q19975 /GB=CAA96645.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073304(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073304 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-34) (srd-34) mRNA, complete cds. 11/11 None
SNAP00000017269 ENSEMBL cdna:SNAP chromosome:CEL140:V:10550179:10551663:-1 9/11 None
GENEFINDER00000017275 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10550179:10551663:-1 11/11 None
F32G8.1 ENSEMBL cdna:known chromosome:CEL140:V:10550179:10551584:-1 gene:F32G8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10550178-10551584(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-34
Ensembl F32G8.1
Entrez Gene 185210 Entrez gene
SwissProt Q19975 EMBL-EBI
WormBase CE05790 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96645 Hypothetical protein F32G8.1 [Caenorhabditis elegans] ref|NP_505705.1| Serpentine Receptor, class D (delta) family member (srd-34) [Caenorhabditis elegans] sp|Q19975|SRD34_CAEEL Serpentine receptor class delta-34 (Protein srd-34) 1.0E-169
blast CAA96645 Hypothetical protein F32G8.1 [Caenorhabditis elegans] ref|NP_505705.1| Serpentine Receptor, class D (delta) family member (srd-34) [Caenorhabditis elegans] sp|Q19975|SRD34_CAEEL Serpentine receptor class delta-34 (Protein srd-34) 1.0E-145
blast CAE64840 Hypothetical protein CBG09636 [Caenorhabditis briggsae] 1.0E-107
blast CAE64840 Hypothetical protein CBG09636 [Caenorhabditis briggsae] 4.0E-99
blast CAA96645 Hypothetical protein F32G8.1 [Caenorhabditis elegans] ref|NP_505705.1| Serpentine Receptor, class D (delta) family member (srd-34) [Caenorhabditis elegans] sp|Q19975|SRD34_CAEEL Serpentine receptor class delta-34 (Protein srd-34) 5.0E-80
blast CAE64840 Hypothetical protein CBG09636 [Caenorhabditis briggsae] 4.0E-51
blast CAE56921 Hypothetical protein CBG24766 [Caenorhabditis briggsae] 2.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505705.1 7 15-37,50-72,98-120,141-160,197-219,246-268,283-305
F32G8.1 7 15-37,50-72,98-120,141-160,197-219,246-268,283-305
SNAP00000017269 2 81-103,118-140
GENEFINDER00000017275 6 7-29,57-79,100-119,156-178,205-227,242-264
Sequence
Target Sequence 
>C. ELEGANS:179157_AT
aagctcttaccttctatctttaattgtgggggtgatctatgtgataacgtacgaaccaga
cgaatctcttgaggttgcttcagagaccaggaagtttcattcaacacaatatgatttccg
gtactatgcggatatcactggatatcaaaaacatttttggagctggttagcaacaaattt
gaatatgataagcattttcgtcccaccaatcatgagtattgtgtttattagactaataca
aattaaactcaacagtttaaaacatttatttactgataaaactgctgctcaagccaagaa
gtttgatcttgctttgacgattcagacacttgtccctgcagtttgtgtgattcctatata
catagctcacttaatacttgagaattatgacttgccgtttctctcaaattttgaaaaagt
tctatatatgatgctttctcttccaacagctattgatgcgttcattgttattgtcaccat
cacaccgtaccaaaaagcctttattgcgtttttcaaggatacgttttgtggcaaaaaagt
ttcacctgcaattgttagacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTCTTACCTTCTATCTTTAATT 401 147 441 Antisense
GACGAATCTCTTGAGGTTGCTTCAG 212 379 499 Antisense
TATGATAAGCATTTTCGTCCCACCA 339 657 624 Antisense
GTTTGATCTTGCTTTGACGATTCAG 543 451 741 Antisense
TGACGATTCAGACACTTGTCCCTGC 248 571 755 Antisense
TTGTCCCTGCAGTTTGTGTGATTCC 289 707 770 Antisense
AGAATTATGACTTGCCGTTTCTCTC 588 75 821 Antisense
TATATGATGCTTTCTCTTCCAACAG 261 661 865 Antisense
ATTGTTATTGTCACCATCACACCGT 249 5 904 Antisense
CATCACACCGTACCAAAAAGCCTTT 17 211 918 Antisense
AGTTTCACCTGCAATTGTTAGACGT 252 63 978 Antisense
Sequence Source Affymetrix Proprietary Database