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[179154_at]

Description T28D6.7 /REP_DB=WormBase Gene ID /WP=CE20113 /TR=O18155 /GB=CAB03451.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 49      6grp_total > 24      4grp_total > 63      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 347.3
(3)
P 		168.4
(-2.7)
A 		245.2
(-0.2)
P 		157.4
(-3)
P 		190
B 280.1
(3)
P 		216.7
(-0.7)
M 		245.8
(1)
P 		177.5
(-3)
P 		103
C 281
(3)
P 		228.6
(-1.7)
P 		237.9
(-0.8)
P 		213.8
(-3)
P 		67
avr 302.8
(3) 		204.6
(-1.9) 		243
(0) 		182.9
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 157.7
(0.8)
A 		153.9
(0.6)
P 		151.6
(0.5)
P 		202.7
(3)
P 		80.5
(-3)
A 		136.5
(-0.3)
P 		122
B 190.5
(2.9)
P 		127
(-0.9)
P 		192.7
(3)
P 		128.2
(-0.8)
P 		92
(-3)
M 		97.9
(-2.6)
P 		101
C 210.7
(3)
P 		165.3
(0.9)
P 		122.5
(-1)
A 		141.7
(-0.1)
P 		79.1
(-3)
A 		118.7
(-1.2)
P 		132
avr 186.3
(3) 		148.7
(0.8) 		155.6
(1.2) 		157.5
(1.3) 		83.9
(-3) 		117.7
(-1) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 126.4
(3)
P 		36.6
(-2.2)
A 		64.1
(-0.6)
P 		23
(-3)
P 		103
B 89.3
(3)
P 		53.5
(-1.2)
M 		57
(-0.8)
P 		37.8
(-3)
P 		52
C 93
(3)
P 		65.7
(0.1)
P 		82.9
(1.9)
P 		36.1
(-3)
P 		57
avr 102.9
(3) 		51.9
(-1.3) 		68
(0) 		32.3
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 29.1
(-2.1)
A 		54.7
(3)
P 		33
(-1.3)
P 		51.4
(2.3)
P 		24.3
(-3)
A 		33.2
(-1.2)
P 		30
B 66.3
(3)
P 		42.3
(-1.5)
P 		46.8
(-0.6)
P 		34
(-3)
P 		37.4
(-2.4)
M 		36.5
(-2.5)
P 		32
C 78.1
(3)
P 		50.4
(-0.2)
P 		31.2
(-2.4)
A 		28.5
(-2.7)
P 		25.6
(-3)
A 		39.7
(-1.4)
P 		53
avr 57.8
(3) 		49.1
(1.2) 		37
(-1.3) 		38
(-1.1) 		29.1
(-3) 		36.5
(-1.5) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179154_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6494
Sequence Type Exemplar sequence
Representative Public ID T28D6.7 NCBI
Target Description T28D6.7 /REP_DB=WormBase Gene ID /WP=CE20113 /TR=O18155 /GB=CAB03451.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067059(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067059 NCBI Caenorhabditis elegans T28D6.7 (T28D6.7) mRNA, complete cds. 11/11 None
GENEFINDER00000023483 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11344249:11346665:-1 11/11 None
SNAP00000023471 ENSEMBL cdna:SNAP chromosome:CEL140:III:11344300:11346347:-1 11/11 None
T28D6.7 ENSEMBL cdna:known chromosome:CEL140:III:11344131:11346665:-1 gene:T28D6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11344295-11346661(-) 99.9 100.0
Public Domain and Genome References
Gene Title
Ensembl T28D6.7
Entrez Gene 189042 Entrez gene
SwissProt O18155 EMBL-EBI
WormBase CE20113 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGAAFFX.1693.1.S1_AT similar to PCTP-like protein (PCTP-L) (StAR-related lipid transfer protein 10) (StARD10) (START domain-containing protein 10) (Serologically defined colon cancer antigen 28 homolog) gga
HG-U133B:223103_AT START domain containing 10 hs
HG-U133_PLUS_2:223103_AT START domain containing 10 hs
HG-U133_PLUS_2:232322_X_AT START domain containing 10 hs
HG-U133B:232322_X_AT START domain containing 10 hs
U133_X3P:G4929572_3P_S_AT START domain containing 10 hs
U133_X3P:G4929572_3P_AT START domain containing 10 hs
U133_X3P:HS.284134.0.S1_3P_AT START domain containing 10 hs
U133_X3P:232322_3P_X_AT START domain containing 10 hs
U133_X3P:223103_3P_AT START domain containing 10 hs
HG-U95E:78794_AT START domain containing 10 hs
U133_X3P:HS2.248522.1.S1_3P_X_AT START domain containing 10 hs
U133_X3P:1557661_3P_AT START domain containing 10 hs
HG-U133_PLUS_2:1557661_AT START domain containing 10 hs
HG-U95E:78998_AT START domain containing 10 hs
MU11KSUBB:Z31174_S_AT START domain containing 10 mm
MU11KSUBB:MSA.9624.0_S_AT START domain containing 10 mm
MG-U74AV2:96735_AT START domain containing 10 mm
MG-U74CV2:170472_AT START domain containing 10 mm
MOE430A:1448956_AT START domain containing 10 mm
MOUSE430A_2:1448956_AT START domain containing 10 mm
MOUSE430_2:1448956_AT START domain containing 10 mm
MG-U74CV2:165876_R_AT START domain containing 10 (Stard10), mRNA mm
MU19KSUBB:TC34066_AT START domain containing 10 (Stard10), mRNA mm
MU19KSUBB:TC34066_G_AT START domain containing 10 (Stard10), mRNA mm
RG-U34B:RC_AI043768_AT START domain containing 10 (predicted) rn
RAE230A:1388948_AT START domain containing 10 (predicted) rn
RAT230_2:1388948_AT START domain containing 10 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB03451 Hypothetical protein T28D6.7 [Caenorhabditis elegans] ref|NP_499460.1| T28D6.7 [Caenorhabditis elegans] 0.0
blast CAB03451 Hypothetical protein T28D6.7 [Caenorhabditis elegans] ref|NP_499460.1| T28D6.7 [Caenorhabditis elegans] 1.0E-159
blast CAE67640 Hypothetical protein CBG13199 [Caenorhabditis briggsae] 1.0E-143
blast CAE67640 Hypothetical protein CBG13199 [Caenorhabditis briggsae] 1.0E-142
blast CAE67640 Hypothetical protein CBG13199 [Caenorhabditis briggsae] 1.0E-140
blast XP_395822 PREDICTED: similar to ENSANGP00000018357, partial [Apis mellifera] 2.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR002913 EMBL-EBI Lipid-binding START 1.9E-69
Pfam IPR002913 EMBL-EBI Lipid-binding START 1.9E-69
Sequence
Target Sequence 
>C. ELEGANS:179154_AT
attaaactctgtatcaccaatccgcccacgcgatttcgtaatgcaacgaagctggctgga
aaccgacaaagaccgtctaatctgctcacattcggtatgccacgaagactatccaccggc
aaaaggatgtattcgagccacggtgctcatttccggatacctaatcaaagaaaaagagca
aggatgtgaagttatctatataagtcattcggatccaaagggaaaacttcccacgtggct
tgtgaacagagttacgaaggtggtggcgccgaaggttataaagaagttgcacaaggcatg
tttgggatatccagagtggaaggagaaacatcatcctacgtggaaaccgtggagtgtacc
ggagcaacagatggatttgccacgtgtcgatttgctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTAAACTCTGTATCACCAATCCGC 330 11 477 Antisense
CGCCCACGCGATTTCGTAATGCAAC 285 257 499 Antisense
GCAACGAAGCTGGCTGGAAACCGAC 200 319 519 Antisense
TCTGCTCACATTCGGTATGCCACGA 528 609 557 Antisense
GCCACGAAGACTATCCACCGGCAAA 224 279 575 Antisense
GTATTCGAGCCACGGTGCTCATTTC 515 451 605 Antisense
AACTTCCCACGTGGCTTGTGAACAG 378 137 701 Antisense
GAAGGTGGTGGCGCCGAAGGTTATA 575 331 732 Antisense
ACATCATCCTACGTGGAAACCGTGG 635 103 804 Antisense
GAAACCGTGGAGTGTACCGGAGCAA 630 311 819 Antisense
GATTTGCCACGTGTCGATTTGCTGA 590 427 850 Antisense
Sequence Source Affymetrix Proprietary Database