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[179153_at]

Description R148.4 /REP_DB=WormBase Gene ID /WP=CE12854 /TR=O17266 /GB=AAB71035.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 42      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 28.6
(-3)
A 		70.2
(3)
A 		50.6
(0.2)
A 		55.9
(0.9)
A 		42
B 31.7
(-3)
A 		103.2
(3)
A 		84
(1.4)
A 		65.3
(-0.2)
A 		72
C 57.8
(1)
A 		50.9
(-3)
A 		54
(-1.2)
A 		61.3
(3)
A 		10
avr 39.4
(-3) 		74.8
(3) 		62.9
(1) 		60.8
(0.6) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 84
(-2.2)
A 		57.1
(-3)
A 		58.7
(-3)
A 		110.8
(-1.4)
A 		217.2
(1.6)
A 		264.1
(3)
A 		207
B 40.3
(-3)
A 		39.5
(-3)
A 		51.3
(-2.7)
A 		108.3
(-1.4)
A 		227.2
(1.5)
P 		291.4
(3)
P 		252
C 49.5
(-2.1)
A 		16.9
(-3)
A 		71
(-1.6)
A 		112.9
(-0.5)
A 		198.6
(1.8)
A 		243.2
(3)
P 		226
avr 57.9
(-2.5) 		37.8
(-3) 		60.3
(-2.4) 		110.7
(-1.1) 		214.3
(1.6) 		266.2
(3) 		228
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.4
(-1.1)
A 		15.2
(3)
A 		13.2
(1.3)
A 		8.2
(-3)
A 		7
B 10.1
(-3)
A 		25.5
(3)
A 		19.5
(0.7)
A 		13.9
(-1.5)
A 		15
C 19.1
(3)
A 		14.6
(-0.1)
A 		18.8
(2.8)
A 		10.3
(-3)
A 		9
avr 13.2
(-1.1) 		18.4
(3) 		17.2
(2.1) 		10.8
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 15.5
(-2.7)
A 		20.3
(-2.1)
A 		12.8
(-3)
A 		28.1
(-1.3)
A 		65.5
(3)
A 		64.3
(2.9)
A 		53
B 14
(-2.9)
A 		13.1
(-3)
A 		12.5
(-3)
A 		28.7
(-2)
A 		92.3
(2)
P 		108.7
(3)
P 		96
C 18.3
(-2)
A 		5.2
(-3)
A 		18.1
(-2)
A 		22.7
(-1.6)
A 		64.3
(1.7)
A 		81.4
(3)
P 		76
avr 15.9
(-2.7) 		12.9
(-3) 		14.5
(-2.9) 		26.5
(-1.9) 		74
(2.1) 		84.8
(3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179153_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7882
Sequence Type Exemplar sequence
Representative Public ID R148.4 NCBI
Target Description R148.4 /REP_DB=WormBase Gene ID /WP=CE12854 /TR=O17266 /GB=AAB71035.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065265(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065265 NCBI Caenorhabditis elegans R148.4 (R148.4) mRNA, complete cds. 11/11 None
GENEFINDER00000030371 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3171703:3174639:1 11/11 None
R148.4 ENSEMBL cdna:known chromosome:CEL140:III:3171703:3172339:1 gene:R148.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030364 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3171702-3172339(+) 81.53 100.0
Public Domain and Genome References
Gene Title
Ensembl R148.4
Entrez Gene 187905 Entrez gene
SwissProt O17266 EMBL-EBI
WormBase CE12854 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71035 Hypothetical protein R148.4 [Caenorhabditis elegans] ref|NP_497666.1| R148.4 [Caenorhabditis elegans] 1.0E-70
blast AAB71035 Hypothetical protein R148.4 [Caenorhabditis elegans] ref|NP_497666.1| R148.4 [Caenorhabditis elegans] 2.0E-69
blast CAE74672 Hypothetical protein CBG22474 [Caenorhabditis briggsae] 8.0E-28
blast CAE74672 Hypothetical protein CBG22474 [Caenorhabditis briggsae] 5.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497666.1 2 29-51,71-93
R148.4 2 29-51,71-93
GENEFINDER00000030371 3 29-51,71-93,145-167
Sequence
Target Sequence 
>C. ELEGANS:179153_AT
ttatggagccctgccaagcttcaaaccgactcgacactgctgcggaatcgtggaaaactc
ggttctctatcttctgctgacagctctcaccaccctccaactcatcgtcttcatcgtaat
ttttatgcacccggagctgcgaaatatgctcaatctgaatccgaatttgaagcaaaatca
ggatattctgcttcttatactcactgcaatgtcttctatatggctgctaactgtgctgtt
cagttttgttggttttatgaagaaaatcacctattctcacttgccactcatcgctactga
gagagatttgcaaaattctgcaatatgtcgtcaaattcggtgtttgcgtattttcgacgc
taccgtacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATGGAGCCCTGCCAAGCTTCAAA 465 681 39 Antisense
CAAGCTTCAAACCGACTCGACACTG 615 185 53 Antisense
TGGAAAACTCGGTTCTCTATCTTCT 662 547 89 Antisense
TCTATCTTCTGCTGACAGCTCTCAC 25 615 104 Antisense
TCCAACTCATCGTCTTCATCGTAAT 534 587 134 Antisense
ATTTTTATGCACCCGGAGCTGCGAA 34 15 157 Antisense
GGATATTCTGCTTCTTATACTCACT 121 511 219 Antisense
TACTCACTGCAATGTCTTCTATATG 21 647 236 Antisense
ATATGGCTGCTAACTGTGCTGTTCA 439 21 256 Antisense
AGAAAATCACCTATTCTCACTTGCC 599 71 299 Antisense
TGCGTATTTTCGACGCTACCGTACC 45 585 383 Antisense
Sequence Source Affymetrix Proprietary Database