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[179152_at]

Description C07C7.1 /REP_DB=WormBase Gene ID /WP=CE02982 /TR=Q17779 /GB=CAA92587.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 29.4
(-1.4)
P 		36
(-0.9)
A 		6.9
(-3)
A 		90.2
(3)
A 		83
B 65
(3)
M 		20.4
(-1.4)
A 		4
(-3)
A 		49.9
(1.5)
A 		61
C 40.2
(1.1)
M 		17.5
(-2.2)
A 		12.3
(-3)
A 		53.3
(3)
A 		41
avr 44.9
(0.9) 		24.6
(-1.2) 		7.7
(-3) 		64.5
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 37.4
(3)
A 		23.6
(0.3)
A 		6.4
(-3)
A 		27.7
(1.1)
A 		13.8
(-1.6)
A 		21.9
(-0)
A 		31
B 30.4
(2.4)
A 		24.8
(1.4)
A 		18.5
(0.2)
A 		33.5
(3)
A 		13.8
(-0.6)
A 		1
(-3)
A 		33
C 25.7
(1.1)
A 		36.6
(3)
A 		2.3
(-3)
A 		18
(-0.3)
A 		4.5
(-2.6)
A 		16.4
(-0.5)
A 		34
avr 31.2
(3) 		28.3
(2.2) 		9.1
(-3) 		26.4
(1.7) 		10.7
(-2.6) 		13.1
(-1.9) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 10.7
(1.7)
P 		7.8
(0.2)
A 		1.8
(-3)
A 		13.2
(3)
A 		11
B 20.7
(3)
M 		5
(-1.8)
A 		0.9
(-3)
A 		10.6
(-0.1)
A 		20
C 13.3
(3)
M 		5
(-2.5)
A 		4.3
(-3)
A 		9
(0.1)
A 		9
avr 14.9
(3) 		5.9
(-1.3) 		2.3
(-3) 		10.9
(1.1) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 6.9
(1.7)
A 		8.4
(3)
A 		1.4
(-3)
A 		7
(1.8)
A 		4.2
(-0.6)
A 		5.3
(0.3)
A 		7
B 10.6
(3)
A 		8.2
(1.6)
A 		4.5
(-0.6)
A 		8.9
(2)
A 		5.6
(0.1)
A 		0.4
(-3)
A 		10
C 9.5
(2)
A 		11.2
(3)
A 		0.6
(-3)
A 		3.6
(-1.3)
A 		1.5
(-2.5)
A 		5.5
(-0.2)
A 		11
avr 9
(2.7) 		9.3
(3) 		2.2
(-3) 		6.5
(0.6) 		3.8
(-1.6) 		3.7
(-1.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179152_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9812
Sequence Type Exemplar sequence
Representative Public ID C07C7.1 NCBI
Target Description C07C7.1 /REP_DB=WormBase Gene ID /WP=CE02982 /TR=Q17779 /GB=CAA92587.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069199(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069199 NCBI Caenorhabditis elegans C07C7.1 (C07C7.1) mRNA, complete cds. 11/11 None
C07C7.1 ENSEMBL cdna:known chromosome:CEL140:IV:9183147:9185666:1 gene:C07C7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022604 4/11 Cross Hyb Matching Probes None
GENEFINDER00000022605 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9183152-9185672(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07C7.1
Entrez Gene 182362 Entrez gene
SwissProt Q17779 EMBL-EBI
WormBase CE02982 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92587 Hypothetical protein C07C7.1 [Caenorhabditis elegans] ref|NP_501600.1| C07C7.1 [Caenorhabditis elegans] 1.0E-158
blast CAE69066 Hypothetical protein CBG15082 [Caenorhabditis briggsae] 3.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501600.1 3 89-111,143-165,225-247
C07C7.1 3 89-111,143-165,225-247
Sequence
Target Sequence 
>C. ELEGANS:179152_AT
atttttacagcacacacgacggacagaacgttgagctcacagattttccacgttttcttg
gcagtttgtacatttttttgttagactatttactaatttatttatattttcaggtatact
gtgtaatgaaaacagatgaaaatactacaatgcctttggcacggatagcccgcgcatact
accaacttgccacaaaaacggtgagtactcaaaaaggttcaggtcatcttggtcagatga
cgtttagcgacctttttacgtgtgtcatcagtcgatatttgttcagtgactcgaggcaga
ggatcgttgcctatataattatcttcttatgctttctaacacctccatccacatcatttg
ttctttatcaaggaacatctgcaaaaattgaatacaaagatgtaaatatgctgaaagaaa
tgaaaatagaagataggaaagtaatattcgaattttgtaattttgttgtcaaatttccac
aataccttgtaaaaaagatgacactcgagcaagtaaggaaatcaaaaccaatttgtgaac
aacttttgctgggtattgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTTACAGCACACACGACGGACA 521 13 383 Antisense
ACGACGGACAGAACGTTGAGCTCAC 418 91 398 Antisense
TTGAGCTCACAGATTTTCCACGTTT 48 705 413 Antisense
CACGTTTTCTTGGCAGTTTGTACAT 47 199 431 Antisense
CGCATACTACCAACTTGCCACAAAA 21 255 555 Antisense
AAGGTTCAGGTCATCTTGGTCAGAT 449 157 596 Antisense
GTCAGATGACGTTTAGCGACCTTTT 634 463 614 Antisense
GCGACCTTTTTACGTGTGTCATCAG 458 289 629 Antisense
GTGACTCGAGGCAGAGGATCGTTGC 82 481 668 Antisense
TATCTTCTTATGCTTTCTAACACCT 460 659 702 Antisense
GAACAACTTTTGCTGGGTATTGCCA 579 351 919 Antisense
Sequence Source Affymetrix Proprietary Database