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[179150_at]

Description T28A8.2 /REP_DB=WormBase Gene ID /WP=CE18973 /TR=Q9XU09 /GB=CAB07284.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 3
(-2.6)
A 		1.8
(-3)
A 		21.4
(3)
A 		8
(-1.1)
A 		20
B 1.5
(-2.9)
A 		21
(3)
A 		1.1
(-3)
A 		8.5
(-0.8)
A 		20
C 3.2
(-2.7)
A 		5.4
(-2.4)
A 		1
(-3)
A 		43.8
(3)
A 		43
avr 2.6
(-3) 		9.4
(-0.7) 		7.8
(-1.2) 		20.1
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 3
(-2.3)
A 		2.4
(-2.6)
A 		13.2
(1.6)
A 		16.9
(3)
A 		10.8
(0.7)
A 		1.3
(-3)
A 		16
B 3.9
(-2.3)
A 		18.8
(3)
A 		3.2
(-2.6)
A 		11.6
(0.4)
A 		13.9
(1.3)
A 		2
(-3)
A 		17
C 3.8
(-3)
A 		3.6
(-3)
A 		28.2
(0.4)
A 		46.8
(3)
A 		3.6
(-3)
A 		18.3
(-1)
A 		43
avr 3.6
(-3) 		8.3
(-1.7) 		14.9
(0.2) 		25.1
(3) 		9.4
(-1.4) 		7.2
(-2) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.1
(-2.2)
A 		0.4
(-3)
A 		5.6
(3)
A 		1.2
(-2.1)
A 		5
B 0.5
(-2.6)
A 		5.2
(3)
A 		0.2
(-3)
A 		1.8
(-1.1)
A 		5
C 1.1
(-2.4)
A 		1.6
(-2)
A 		0.4
(-3)
A 		7.4
(3)
A 		7
avr 0.9
(-3) 		2.4
(0.5) 		2.1
(-0.2) 		3.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.6
(-2.6)
A 		0.8
(-2.3)
A 		2.9
(0.9)
A 		4.3
(3)
A 		3.2
(1.4)
A 		0.3
(-3)
A 		4
B 1.4
(-2.3)
A 		6.3
(3)
A 		0.8
(-2.9)
A 		3.1
(-0.4)
A 		5.7
(2.4)
A 		0.7
(-3)
A 		6
C 1.4
(-2.8)
A 		1.1
(-3)
A 		7.2
(1.4)
A 		9.4
(3)
A 		1.2
(-2.9)
A 		6.1
(0.6)
A 		8
avr 1.1
(-3) 		2.7
(-0.9) 		3.6
(0.3) 		5.6
(3) 		3.4
(0.1) 		2.4
(-1.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179150_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7567
Sequence Type Exemplar sequence
Representative Public ID T28A8.2 NCBI
Target Description T28A8.2 /REP_DB=WormBase Gene ID /WP=CE18973 /TR=Q9XU09 /GB=CAB07284.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067390(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067390 NCBI Caenorhabditis elegans T28A8.2 (T28A8.2) mRNA, complete cds. 11/11 None
GENEFINDER00000022269 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13491854:13495187:-1 11/11 None
T28A8.2 ENSEMBL cdna:known chromosome:CEL140:III:13493408:13495187:-1 gene:T28A8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022260 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13493403-13495183(-) 97.27 100.0
Public Domain and Genome References
Gene Title
Ensembl T28A8.2
Entrez Gene 189007 Entrez gene
SwissProt Q9XU09 EMBL-EBI
WormBase CE18973 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8107 galactoside 2-alpha-L-fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07284 Hypothetical protein T28A8.2 [Caenorhabditis elegans] ref|NP_499791.1| T28A8.2 [Caenorhabditis elegans] 1.0E-174
blast CAB07284 Hypothetical protein T28A8.2 [Caenorhabditis elegans] ref|NP_499791.1| T28A8.2 [Caenorhabditis elegans] 1.0E-171
blast CAB07352 Hypothetical protein F11A5.5 [Caenorhabditis elegans] ref|NP_507085.1| F11A5.5 [Caenorhabditis elegans] 3.0E-65
blast AAB94261 Hypothetical protein C14C6.3 [Caenorhabditis elegans] ref|NP_503240.2| C14C6.3 [Caenorhabditis elegans] 2.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 4.7E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499791.1 1 7-29
T28A8.2 1 7-29
GENEFINDER00000022269 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:179150_AT
aatacttcccgaatatgcgatccgaactacgtggattccttgaaacaagcgaaaaatttc
caacactaccgaaatctgataataaaaattacgtcacctgcgtgcatatccggagaagcg
acttttttgacgttggattccacgtgggaagtgagaaatcaataagagaagtgataggat
atataaaaacaaacgtaacgctgctccaagatcaaaaagtgagtttcgtaattttcggcg
acgacatcaacttcatgcggagcctaattcaaaatcaggtaccaaactttcgtttttttt
tgttttgcaaaatcttttttttttctaaagcagcgcactcgaccttcggatggtggatgg
gatacttgtcaaaaggaaatcaagtttattatgctgatattcggggaacaaacgacagtg
tctataaaactggagatttgaaacccgacgactattacttacctcattggattcccgtga
aagtggaagcagatattttcagttatcgtaatttttttaaaaagaaaattaaaatttcta
ttggttttcttctttttccattatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATACTTCCCGAATATGCGATCCGA 213 173 479 Antisense
GCGATCCGAACTACGTGGATTCCTT 598 289 495 Antisense
AAATTACGTCACCTGCGTGCATATC 427 115 564 Antisense
GCGTGCATATCCGGAGAAGCGACTT 551 291 578 Antisense
GCGACTTTTTTGACGTTGGATTCCA 429 289 596 Antisense
CGACATCAACTTCATGCGGAGCCTA 45 253 720 Antisense
TTTTTCTAAAGCAGCGCACTCGACC 601 673 798 Antisense
GCACTCGACCTTCGGATGGTGGATG 414 313 813 Antisense
GGAGATTTGAAACCCGACGACTATT 610 513 910 Antisense
TTACTTACCTCATTGGATTCCCGTG 94 681 933 Antisense
TTGGTTTTCTTCTTTTTCCATTATG 384 705 1019 Antisense
Sequence Source Affymetrix Proprietary Database