[Home] | [Total List]

[179149_at]

Description F47B8.8 /REP_DB=WormBase Gene ID /WP=CE10646 /TR=Q20521 /GB=CAB01196.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 51      4grp_high_8_8 > 12      6grp_total > 41      4grp_total > 04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 534
1 2 3 4 range
A 456.2
(-0.8)
P 		355.4
(-2.2)
M 		294.6
(-3)
P 		726
(3)
P 		431
B 528.2
(-0.6)
P 		397
(-2.2)
P 		333.5
(-3)
M 		828.5
(3)
P 		495
C 499
(-0.8)
P 		408.5
(-2.3)
P 		360.5
(-3)
P 		746.2
(3)
P 		386
avr 494.5
(-0.7) 		387
(-2.2) 		329.5
(-3) 		766.9
(3) 		437

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 584
1 2 3 4 5 6 range
A 374.2
(-0.5)
P 		574.1
(1.5)
P 		718.1
(3)
P 		643.7
(2.2)
P 		402.7
(-0.2)
P 		134.6
(-3)
A 		584
B 415
(0.1)
P 		589
(2.1)
P 		663.9
(3)
P 		473.9
(0.8)
P 		384.7
(-0.2)
P 		148
(-3)
P 		516
C 462
(0.6)
P 		464.4
(0.6)
P 		663.2
(2.9)
P 		675.6
(3)
P 		444.1
(0.4)
P 		151
(-3)
P 		525
avr 417.1
(0) 		542.5
(1.4) 		681.7
(3) 		597.7
(2.1) 		410.5
(-0) 		144.5
(-3) 		537
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 166.1
(3)
P 		77.2
(-3)
M 		77
(-3)
P 		106.3
(-1)
P 		89
B 168.4
(2.5)
P 		98.1
(-1.7)
P 		77.3
(-3)
M 		176.6
(3)
P 		99
C 165.2
(3)
P 		117.5
(-3)
P 		125.7
(-2)
P 		125.8
(-2)
P 		48
avr 166.6
(3) 		97.6
(-2.6) 		93.3
(-3) 		136.2
(0.5) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 69
(-1.7)
P 		204.2
(3)
P 		156.4
(1.3)
P 		163.3
(1.6)
P 		121.5
(0.1)
P 		32.8
(-3)
A 		171
B 144.4
(0.8)
P 		196
(3)
P 		161.2
(1.5)
P 		125.5
(-0)
P 		156.3
(1.3)
P 		55.2
(-3)
P 		141
C 171.2
(3)
P 		141.7
(1.5)
P 		168.8
(2.9)
P 		135.9
(1.2)
P 		143.7
(1.6)
P 		50.5
(-3)
P 		121
avr 128.2
(0.7) 		180.6
(3) 		162.1
(2.2) 		141.6
(1.3) 		140.5
(1.2) 		46.2
(-3) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179149_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13824
Sequence Type Exemplar sequence
Representative Public ID F47B8.8 NCBI
Target Description F47B8.8 /REP_DB=WormBase Gene ID /WP=CE10646 /TR=Q20521 /GB=CAB01196.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074152(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074152 NCBI Caenorhabditis elegans F47B8.8 (F47B8.8) mRNA, complete cds. 11/11 None
SNAP00000011441 ENSEMBL cdna:SNAP chromosome:CEL140:V:14334331:14335168:1 11/11 None
GENEFINDER00000011453 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14334331:14337264:1 11/11 None
F47B8.8 ENSEMBL cdna:known chromosome:CEL140:V:14334331:14335168:1 gene:F47B8.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14334330-14335168(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B8.8
Entrez Gene 185900 Entrez gene
SwissProt Q20521 EMBL-EBI
WormBase CE10646 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01197 Hypothetical protein F47B8.7 [Caenorhabditis elegans] ref|NP_506554.1| Serpentine Receptor, class M family member (srm-4) [Caenorhabditis elegans] 0.0
blast CAI70418 Hypothetical protein F47B8.12 [Caenorhabditis elegans] ref|NP_001023942.1| Serpentine Receptor, class M family member (srm-5) [Caenorhabditis elegans] 1.0E-125
blast CAE60918 Hypothetical protein CBG04635 [Caenorhabditis briggsae] 1.0E-125
blast CAB01196 Hypothetical protein F47B8.8 [Caenorhabditis elegans] ref|NP_506553.1| F47B8.8 [Caenorhabditis elegans] 1.0E-107
blast CAB01196 Hypothetical protein F47B8.8 [Caenorhabditis elegans] ref|NP_506553.1| F47B8.8 [Caenorhabditis elegans] 1.0E-102
blast CAB01195 Hypothetical protein F47B8.6 [Caenorhabditis elegans] ref|NP_506552.1| F47B8.6 [Caenorhabditis elegans] 4.0E-67
blast CAB01195 Hypothetical protein F47B8.6 [Caenorhabditis elegans] ref|NP_506552.1| F47B8.6 [Caenorhabditis elegans] 8.0E-63
blast CAE60919 Hypothetical protein CBG04636 [Caenorhabditis briggsae] 7.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.7E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011453 7 297-319,339-358,383-405,425-447,493-515,536-558,573-595
Sequence
Target Sequence 
>C. ELEGANS:179149_AT
tcaccacatatcggccgactagatacatgctccaactcgatccaaatatggcaaacaaga
cttactgcggaaaagtgagagtcgactatgaattcactgcagaaacttcggaaatcaaaa
ttcaagcatcaagggattttcaatggacttctattaggctgatcaatttttacgctgtat
acctggaatgtcccatttatgcaagtgtgttatgtgacgactataaccatgatctggaat
ctgagattcttacactttcactggacacaccgctaaccccagacaatacacaaaatggat
tctacattgaattagaatttactggacccataattattgcagggcaaactactggcctct
ttgcggttgatgagaactcaattacggcaaatatgaaagatggaaatgcacataaagttg
caccatgttatgaaggtgttgctatcaagacctggctgactgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCACATATCGGCCGACTAGATA 643 625 26 Antisense
TAGATACATGCTCCAACTCGATCCA 533 653 45 Antisense
GAGAGTCGACTATGAATTCACTGCA 595 395 102 Antisense
TAGGCTGATCAATTTTTACGCTGTA 455 653 180 Antisense
TACGCTGTATACCTGGAATGTCCCA 136 649 196 Antisense
GAATGTCCCATTTATGCAAGTGTGT 637 331 211 Antisense
GATTCTTACACTTTCACTGGACACA 126 431 270 Antisense
CGCTAACCCCAGACAATACACAAAA 201 251 296 Antisense
TGCAGGGCAAACTACTGGCCTCTTT 485 577 363 Antisense
TACTGGCCTCTTTGCGGTTGATGAG 683 647 375 Antisense
GCTATCAAGACCTGGCTGACTGTGA 586 303 466 Antisense
Sequence Source Affymetrix Proprietary Database