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[179148_at]

Description C17H1.4 /REP_DB=WormBase Gene ID /WP=CE15626 /TR=O45255 /GB=CAB07168.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 11.6
(-3)
A 		42.8
(0.4)
A 		20.5
(-2)
A 		66.4
(3)
A 		55
B 5.3
(-3)
A 		5.5
(-2.7)
A 		6.2
(-1.8)
A 		9.9
(3)
A 		5
C 5.4
(-3)
A 		8.8
(-2.6)
A 		14.9
(-2)
A 		61.3
(3)
A 		56
avr 7.4
(-3) 		19
(-1.2) 		13.9
(-2) 		45.9
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 32.8
(3)
A 		4.8
(-3)
A 		5.9
(-2.8)
A 		22.1
(0.7)
A 		7
(-2.5)
A 		19.4
(0.1)
A 		28
B 39
(3)
A 		9.2
(-2.4)
A 		5.8
(-3)
A 		6.7
(-2.8)
A 		10.2
(-2.2)
A 		15.1
(-1.3)
A 		33
C 42.5
(2.6)
A 		19.4
(-1.1)
A 		7.4
(-3)
A 		45
(3)
A 		35
(1.4)
A 		12.8
(-2.1)
A 		38
avr 38.1
(3) 		11.1
(-2.1) 		6.4
(-3) 		24.6
(0.4) 		17.4
(-0.9) 		15.8
(-1.2) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.2
(-3)
A 		9.3
(2.6)
A 		5.4
(-1.7)
A 		9.7
(3)
A 		6
B 1.7
(-0.4)
A 		1.4
(-3)
A 		1.4
(-3)
A 		2.1
(3)
A 		1
C 1.8
(-3)
A 		2.5
(-2.5)
A 		5.2
(-0.6)
A 		10.3
(3)
A 		9
avr 2.6
(-3) 		4.4
(-0.8) 		4
(-1.3) 		7.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6
(3)
A 		1.7
(-2.5)
A 		1.3
(-3)
A 		5.6
(2.5)
A 		2.1
(-2)
A 		4.7
(1.3)
A 		5
B 13.6
(3)
A 		3.1
(-2.2)
A 		1.4
(-3)
A 		1.8
(-2.8)
A 		4.1
(-1.7)
A 		5.6
(-0.9)
A 		12
C 15.8
(3)
A 		5.9
(-1.3)
A 		1.9
(-3)
A 		9.1
(0.1)
A 		11.3
(1.1)
A 		4.3
(-2)
A 		14
avr 11.8
(3) 		3.6
(-1.8) 		1.5
(-3) 		5.5
(-0.7) 		5.8
(-0.5) 		4.9
(-1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179148_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.605
Sequence Type Exemplar sequence
Representative Public ID C17H1.4 NCBI
Target Description C17H1.4 /REP_DB=WormBase Gene ID /WP=CE15626 /TR=O45255 /GB=CAB07168.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060895(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060895 NCBI Caenorhabditis elegans C17H1.4 (C17H1.4) mRNA, complete cds. 11/11 None
SNAP00000005612 ENSEMBL cdna:SNAP chromosome:CEL140:I:13115612:13120550:-1 11/11 None
GENEFINDER00000005626 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13115612:13120550:-1 11/11 None
C17H1.4 ENSEMBL cdna:known chromosome:CEL140:I:13115612:13120550:-1 gene:C17H1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13115542-13120481(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H1.4
Entrez Gene 173179 Entrez gene
SwissProt O45255 EMBL-EBI
WormBase CE15626 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07168 Hypothetical protein C17H1.4 [Caenorhabditis elegans] ref|NP_493296.1| C17H1.4 [Caenorhabditis elegans] 1.0E-169
blast CAB07165 Hypothetical protein C17H1.1 [Caenorhabditis elegans] ref|NP_493298.1| C17H1.1 [Caenorhabditis elegans] 1.0E-78
blast CAB07171 Hypothetical protein C17H1.7 [Caenorhabditis elegans] ref|NP_493301.1| C17H1.7 [Caenorhabditis elegans] 6.0E-65
Sequence
Target Sequence 
>C. ELEGANS:179148_AT
agagcacgagctacaacatcaattaaaactggaaaatatcgagaagaaatctgaaataga
taaagccaactttgataaagcagttagagctgatattcttgaaaacaagtttaacagggc
cgtgcagcgaacaaaacgcgcggggtgctcgttgtcagatgccatggagattttgaacga
atcaatcggttctctgcaagatgaagatggtgaacagacattgacaagggctaggaaccg
acagattggcataactcgggtgaatcatggcttgaatgatctgtcggaagcagcagaaaa
catattaagactgcatgggctcgacgttgaggaggacagcacaaacaaagaaatttctac
acaaattctagacgatattggtactgccagagaatgtttgagccagcttgtaaactctga
tgaggaaactttgttggaaacttttcaaatgctcagcgagaaaacttcttttttatcttc
attagctgttgacattcttctcgaaattgccctacaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGCACGAGCTACAACATCAATTA 32 71 1482 Antisense
GTTTAACAGGGCCGTGCAGCGAACA 505 449 1590 Antisense
ACAAAACGCGCGGGGTGCTCGTTGT 526 111 1612 Antisense
GTGCTCGTTGTCAGATGCCATGGAG 440 477 1626 Antisense
TGAACGAATCAATCGGTTCTCTGCA 30 575 1655 Antisense
GACAGATTGGCATAACTCGGGTGAA 218 367 1721 Antisense
TAAGACTGCATGGGCTCGACGTTGA 125 637 1787 Antisense
GCCAGAGAATGTTTGAGCCAGCTTG 592 279 1867 Antisense
GGAAACTTTTCAAATGCTCAGCGAG 656 527 1917 Antisense
AACTTCTTTTTTATCTTCATTAGCT 522 137 1944 Antisense
TTCTTCTCGAAATTGCCCTACAAAA 577 689 1976 Antisense
Sequence Source Affymetrix Proprietary Database