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[179147_at]

Description T22C1.5 /REP_DB=WormBase Gene ID /WP=CE13954 /TR=Q22665 /GB=CAA99929.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 63      6grp_total > 51      4grp_total > 01      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 73.8
(-2.2)
A 		65.1
(-3)
A 		95.8
(-0)
M 		127.3
(3)
P 		62
B 44.2
(-2.6)
A 		61.7
(0.4)
A 		41.9
(-3)
A 		76.8
(3)
P 		35
C 83.3
(-1.3)
A 		63.4
(-3)
A 		74.7
(-2)
P 		132.8
(3)
P 		69
avr 67.1
(-2.5) 		63.4
(-3) 		70.8
(-2.1) 		112.3
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 73.5
(0.1)
A 		54.4
(-2.5)
P 		87.8
(2.1)
P 		71.4
(-0.2)
P 		94.2
(3)
P 		50.8
(-3)
A 		43
B 76.4
(0.6)
P 		87.3
(3)
P 		80
(1.4)
P 		74.9
(0.3)
A 		60
(-3)
P 		81.8
(1.8)
P 		27
C 65.6
(-1)
P 		82.8
(2)
P 		71.5
(0.1)
P 		88.2
(3)
P 		54.2
(-3)
P 		67.1
(-0.7)
P 		34
avr 71.8
(-0.6) 		74.8
(0.7) 		79.8
(3) 		78.2
(2.3) 		69.5
(-1.7) 		66.6
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 26.9
(3)
A 		14.1
(-3)
A 		25
(2.1)
M 		18.6
(-0.9)
P 		13
B 14.1
(0.9)
A 		15.2
(1.9)
A 		9.7
(-3)
A 		16.4
(3)
P 		7
C 27.6
(3)
A 		18.2
(-3)
A 		26
(2)
P 		22.4
(-0.3)
P 		9
avr 22.9
(3) 		15.8
(-3) 		20.2
(0.7) 		19.1
(-0.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 13.6
(-2.6)
A 		19.3
(-0.4)
P 		19.1
(-0.5)
P 		18.1
(-0.9)
P 		28.4
(3)
P 		12.4
(-3)
A 		16
B 26.6
(0.9)
P 		29.1
(2.2)
P 		19.4
(-3)
P 		19.8
(-2.8)
A 		24.4
(-0.3)
P 		30.5
(3)
P 		11
C 24.3
(2.2)
P 		25.3
(3)
P 		18.2
(-2.5)
P 		17.7
(-2.8)
P 		17.5
(-3)
P 		22.5
(0.8)
P 		8
avr 21.5
(-0) 		24.6
(3) 		18.9
(-2.6) 		18.5
(-3) 		23.4
(1.8) 		21.8
(0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179147_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.623
Sequence Type Exemplar sequence
Representative Public ID T22C1.5 NCBI
Target Description T22C1.5 /REP_DB=WormBase Gene ID /WP=CE13954 /TR=Q22665 /GB=CAA99929.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059790(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059790 NCBI Caenorhabditis elegans T22C1.5 (T22C1.5) mRNA, complete cds. 11/11 None
SNAP00000000049 ENSEMBL cdna:SNAP chromosome:CEL140:I:7949045:7949823:1 11/11 None
GENEFINDER00000000063 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7949045:7953425:1 11/11 None
T22C1.5 ENSEMBL cdna:known chromosome:CEL140:I:7949191:7949823:1 gene:T22C1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7949121-7949754(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22C1.5
Entrez Gene 172566 Entrez gene
SwissProt Q22665 EMBL-EBI
WormBase CE13954 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99923 Hypothetical protein T22C1.6 [Caenorhabditis elegans] ref|NP_492192.1| T22C1.6 [Caenorhabditis elegans] 1.0E-169
blast CAE63729 Hypothetical protein CBG08254 [Caenorhabditis briggsae] 1.0E-135
blast CAA99929 Hypothetical protein T22C1.5 [Caenorhabditis elegans] ref|NP_492191.1| T22C1.5 [Caenorhabditis elegans] 1.0E-64
blast CAA99929 Hypothetical protein T22C1.5 [Caenorhabditis elegans] ref|NP_492191.1| T22C1.5 [Caenorhabditis elegans] 3.0E-64
blast CAA99929 Hypothetical protein T22C1.5 [Caenorhabditis elegans] ref|NP_492191.1| T22C1.5 [Caenorhabditis elegans] 2.0E-60
Sequence
Target Sequence 
>C. ELEGANS:179147_AT
gtttgggatctataccttgatcaaaagcgataaagcgaaaccaagacaagatttgttcct
gagaaactttgtaccaccatcttcaaatgaattggatccctatgaagatggaacatttga
gcataaaaaaccaattcccgagaaggttgtacagtgcaccaatttttcatatttcggaat
gaatcaaagcaggttcaaaattgatgatactacgacatcgttgtgtgaccatgccattga
acgaaaaaagcttctggagaagttgagaagaatggatgaagaaaccgcggaacaagatgc
agaagatgaaaaggaaaacgatgagaacaaagagccagaaagcccgaatcgaacacttcg
aaaaacaaaagtggacacgcctcgtccgaaaacagcacaattgaaaagaaaaagaatcat
tatgagcagtgatgatgactcagaagacgaattctcaatgcgaagctctcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGGGATCTATACCTTGATCAAA 119 453 15 Antisense
GAGAAACTTTGTACCACCATCTTCA 676 389 75 Antisense
GAGCATAAAAAACCAATTCCCGAGA 473 387 133 Antisense
TTCCCGAGAAGGTTGTACAGTGCAC 581 695 149 Antisense
GTGCACCAATTTTTCATATTTCGGA 373 481 168 Antisense
GACATCGTTGTGTGACCATGCCATT 655 369 228 Antisense
GAAACCGCGGAACAAGATGCAGAAG 347 357 295 Antisense
GAAAGCCCGAATCGAACACTTCGAA 436 357 352 Antisense
ACAAAAGTGGACACGCCTCGTCCGA 175 113 379 Antisense
GCCTCGTCCGAAAACAGCACAATTG 254 283 393 Antisense
CGAATTCTCAATGCGAAGCTCTCCT 243 253 462 Antisense
Sequence Source Affymetrix Proprietary Database