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[179145_at]

Description F16H6.9 /REP_DB=WormBase Gene ID /WP=CE18605 /TR=Q9XV92 /GB=CAB04127.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 14.2
(-1.1)
A 		10.2
(-1.8)
A 		3.3
(-3)
A 		37
(3)
A 		34
B 5.1
(-0)
A 		4.3
(-1)
A 		2.7
(-3)
A 		7.5
(3)
A 		5
C 4.4
(-3)
A 		11.2
(-0.8)
A 		11
(-0.8)
A 		22.8
(3)
A 		18
avr 7.9
(-2.2) 		8.6
(-2) 		5.7
(-3) 		22.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 18.9
(-0.5)
A 		7.2
(-3)
A 		10
(-2.4)
A 		35.6
(3)
A 		10.3
(-2.3)
A 		27.5
(1.3)
A 		28
B 24.3
(3)
A 		7.3
(-3)
A 		8.5
(-2.6)
A 		11
(-1.7)
A 		23.6
(2.8)
A 		9.4
(-2.3)
A 		17
C 5.2
(-3)
A 		33.5
(3)
A 		13.1
(-1.3)
A 		14.7
(-1)
A 		27.4
(1.7)
A 		7.1
(-2.6)
A 		28
avr 16.1
(0.4) 		16
(0.3) 		10.5
(-3) 		20.4
(3) 		20.4
(3) 		14.7
(-0.5) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 5.2
(2.7)
A 		2.2
(-1.3)
A 		0.9
(-3)
A 		5.4
(3)
A 		5
B 1.6
(3)
A 		1.1
(0)
A 		0.6
(-3)
A 		1.6
(3)
A 		1
C 1.4
(-3)
A 		3.2
(1.5)
A 		3.8
(3)
A 		3.8
(3)
A 		2
avr 2.7
(0) 		2.2
(-1.7) 		1.8
(-3) 		3.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 3.5
(-1.9)
A 		2.6
(-2.6)
A 		2.2
(-3)
A 		9
(3)
A 		3.1
(-2.2)
A 		6.7
(1)
A 		7
B 8.5
(2.1)
A 		2.4
(-2.8)
A 		2.1
(-3)
A 		2.9
(-2.4)
A 		9.6
(3)
A 		3.5
(-1.9)
A 		8
C 1.9
(-3)
A 		10.2
(3)
A 		3.3
(-2)
A 		3
(-2.2)
A 		8.9
(2.1)
A 		2.4
(-2.6)
A 		8
avr 4.6
(-0.3) 		5.1
(0.3) 		2.5
(-3) 		5
(0.2) 		7.2
(3) 		4.2
(-0.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179145_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13850
Sequence Type Exemplar sequence
Representative Public ID F16H6.9 NCBI
Target Description F16H6.9 /REP_DB=WormBase Gene ID /WP=CE18605 /TR=Q9XV92 /GB=CAB04127.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075163(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075163 NCBI Caenorhabditis elegans F16H6.9 (F16H6.9) mRNA, complete cds. 11/11 A 
SNAP00000001302 ENSEMBL cdna:SNAP chromosome:CEL140:V:18222118:18224873:1 11/11 None
GENEFINDER00000001305 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18217580:18224873:1 11/11 None
F16H6.9 ENSEMBL cdna:known chromosome:CEL140:V:18219658:18224873:1 gene:F16H6.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18219657-18224873(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16H6.9
Entrez Gene 184596 Entrez gene
SwissProt Q9XV92 EMBL-EBI
WormBase CE18605 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04127 Hypothetical protein F16H6.9 [Caenorhabditis elegans] ref|NP_507564.1| F16H6.9 [Caenorhabditis elegans] 0.0
blast CAB04124 Hypothetical protein F16H6.8 [Caenorhabditis elegans] ref|NP_507563.1| F16H6.8 [Caenorhabditis elegans] 1.0E-140
blast CAB04124 Hypothetical protein F16H6.8 [Caenorhabditis elegans] ref|NP_507563.1| F16H6.8 [Caenorhabditis elegans] 1.0E-117
blast CAE17799 Hypothetical protein F26D2.16 [Caenorhabditis elegans] ref|NP_001023852.1| F26D2.16 [Caenorhabditis elegans] 8.0E-47
blast CAE17799 Hypothetical protein F26D2.16 [Caenorhabditis elegans] ref|NP_001023852.1| F26D2.16 [Caenorhabditis elegans] 1.0E-46
Sequence
Target Sequence 
>C. ELEGANS:179145_AT
tcgaacgtatggtccagctaccagcccacagaaatgtcgatttcaatatcacatctgtaa
aagataaaggggaacattttgtggtggacatcactgtgaccggagttcgctcttatccaa
ttgccattgccttcaaggtagctgtgatggggaatagtgcactcttgatccacgcaaaac
aattcaactgccaccgtaaaccattcattgagccattgagccattttgatgagaaaaagg
atgtaataaccgaatttctggacaattttctgatcgcagttcgtcaccgttttgcacgat
ccctgggtaacattataactgacatttttgtctacaaatcgtgcgaaggaaatgtttcaa
aggaagatttcatcaaacatattatgagcttgctgaaaacccaaagggttgactttgata
tccaatctgttcaagagacgcaggataattatatggtcacaattaaagtcactggattgt
atgcagaacctgtggatattctttttgaagttacaaagtatatgcgtggaaccgtagtta
tgctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAACGTATGGTCCAGCTACCAGC 536 597 1469 Antisense
AGCTACCAGCCCACAGAAATGTCGA 263 79 1484 Antisense
TTTTGTGGTGGACATCACTGTGACC 468 669 1545 Antisense
ATCCAATTGCCATTGCCTTCAAGGT 164 39 1583 Antisense
AATAGTGCACTCTTGATCCACGCAA 409 173 1621 Antisense
CTGCCACCGTAAACCATTCATTGAG 688 235 1656 Antisense
CATTCATTGAGCCATTGAGCCATTT 642 215 1670 Antisense
AATTTTCTGATCGCAGTTCGTCACC 17 175 1732 Antisense
GTTTTGCACGATCCCTGGGTAACAT 36 449 1757 Antisense
GGGTTGACTTTGATATCCAATCTGT 555 495 1874 Antisense
TATGCGTGGAACCGTAGTTATGCTT 318 657 1989 Antisense
Sequence Source Affymetrix Proprietary Database