[Home] | [Total List]

[179143_at]

Description C47F8.1 /REP_DB=WormBase Gene ID /WP=CE17570 /TR=O62111 /GB=CAA15835.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 43      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 22.4
(3)
A 		14.5
(0.7)
A 		1.4
(-3)
A 		3.1
(-2.5)
A 		21
B 5.2
(-2.9)
A 		44.5
(3)
A 		11.2
(-2)
A 		4.7
(-3)
A 		40
C 1.9
(-3)
A 		27.2
(3)
A 		24.2
(2.3)
A 		8.6
(-1.4)
A 		25
avr 9.8
(-1.9) 		28.7
(3) 		12.3
(-1.2) 		5.5
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 45.1
(1.2)
A 		5.8
(-3)
A 		7.5
(-2.8)
A 		23.5
(-1.1)
A 		15.9
(-1.9)
A 		62.5
(3)
A 		57
B 27.1
(-0.3)
A 		19.5
(-3)
A 		20.3
(-2.7)
A 		23.9
(-1.5)
A 		25
(-1.1)
A 		36.6
(3)
A 		17
C 29.2
(-0.1)
A 		14.8
(-1.9)
A 		47.9
(2.1)
A 		5.7
(-3)
A 		29.3
(-0.1)
A 		55
(3)
A 		49
avr 33.8
(0.2) 		13.4
(-3) 		25.2
(-1.1) 		17.7
(-2.3) 		23.4
(-1.4) 		51.4
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 8.2
(3)
A 		3.1
(-0.9)
A 		0.4
(-3)
A 		0.5
(-2.9)
A 		8
B 1.7
(-2.6)
A 		11
(3)
A 		2.6
(-2)
A 		1
(-3)
A 		10
C 0.6
(-3)
A 		7.8
(2.5)
A 		8.4
(3)
A 		1.5
(-2.3)
A 		8
avr 3.5
(-0.6) 		7.3
(3) 		3.8
(-0.3) 		1
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.3
(-0)
A 		2.1
(-2.8)
A 		1.6
(-3)
A 		6
(-1.1)
A 		4.8
(-1.6)
A 		15.2
(3)
A 		14
B 9.4
(0.1)
A 		6.5
(-1.9)
A 		4.9
(-3)
A 		6.3
(-2)
A 		10.1
(0.6)
A 		13.6
(3)
A 		9
C 10.8
(0.4)
A 		4.5
(-1.8)
A 		12.2
(0.8)
A 		1.1
(-3)
A 		9.5
(-0.1)
A 		18.4
(3)
A 		17
avr 9.5
(-0.3) 		4.4
(-3) 		6.2
(-2) 		4.5
(-2.9) 		8.1
(-1) 		15.7
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179143_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1392
Sequence Type Exemplar sequence
Representative Public ID C47F8.1 NCBI
Target Description C47F8.1 /REP_DB=WormBase Gene ID /WP=CE17570 /TR=O62111 /GB=CAA15835.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060719(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060719 NCBI Caenorhabditis elegans C47F8.1 (C47F8.1) mRNA, complete cds. 11/11 None
GENEFINDER00000020218 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12337950:12344661:1 11/11 None
SNAP00000020215 ENSEMBL cdna:SNAP chromosome:CEL140:I:12343264:12344661:1 11/11 None
C47F8.1 ENSEMBL cdna:known chromosome:CEL140:I:12343264:12344661:1 gene:C47F8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12343194-12344592(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47F8.1
Entrez Gene 173107 Entrez gene
SwissProt O62111 EMBL-EBI
WormBase CE17570 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA15836 Hypothetical protein C47F8.2 [Caenorhabditis elegans] ref|NP_493119.2| C47F8.2 [Caenorhabditis elegans] 1.0E-180
blast CAA15835 Hypothetical protein C47F8.1 [Caenorhabditis elegans] ref|NP_493120.1| C47F8.1 [Caenorhabditis elegans] 1.0E-148
blast CAA15835 Hypothetical protein C47F8.1 [Caenorhabditis elegans] ref|NP_493120.1| C47F8.1 [Caenorhabditis elegans] 1.0E-132
blast CAB04030 Hypothetical protein E03H4.6 [Caenorhabditis elegans] ref|NP_493149.1| E03H4.6 [Caenorhabditis elegans] 7.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.3E-18
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 9.1E-7
Sequence
Target Sequence 
>C. ELEGANS:179143_AT
aatgcacacgttttgggttgagacagtttatctagactgcactaatgtggaggaaggtga
tgtagtgaaggtagtggagtacctgaaaaaggagaaaccttattatctgaaattatactt
tgaatgcccaatgatctctgactctctttggcagttaatgttgaattgtgaagctgacgt
attgataattagtgtcgaccgggaagttaaggtcacatttgacaatgtgcctttgctatt
caactgcgaatgtatcattttgcacggggtaaagttctccgaaaaagggatgaacttgct
cttcaaaacctggcaatcgagtaaagaacgtacacttcaatgtgtttcattgacccggaa
attaggaccattttggaaaaagcaggccaatgagaaggttgtgctgaaagggatcgatgt
tgagtcagtggagaaaaaacgaattttcaaagtaaaaaaggacggtattaagaaatccac
gacctataatcttgtgaagaatgacggagagctggcgacactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCACACGTTTTGGGTTGAGACA 468 165 288 Antisense
TGAATGCCCAATGATCTCTGACTCT 577 575 408 Antisense
TCTCTGACTCTCTTTGGCAGTTAAT 232 611 422 Antisense
TGTGCCTTTGCTATTCAACTGCGAA 417 557 513 Antisense
GAATGTATCATTTTGCACGGGGTAA 225 323 535 Antisense
TGAACTTGCTCTTCAAAACCTGGCA 614 571 578 Antisense
GAACGTACACTTCAATGTGTTTCAT 665 347 613 Antisense
CATTGACCCGGAAATTAGGACCATT 97 215 635 Antisense
AAGGGATCGATGTTGAGTCAGTGGA 455 159 695 Antisense
AGAAATCCACGACCTATAATCTTGT 283 73 758 Antisense
GAATGACGGAGAGCTGGCGACACTG 622 331 786 Antisense
Sequence Source Affymetrix Proprietary Database