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[179142_at]

Description C15C8.6 /REP_DB=WormBase Gene ID /WP=CE05290 /TR=Q18021 /GB=CAA99778.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 20      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 101.4
(1)
A 		41.2
(-2.7)
A 		35.9
(-3)
A 		133
(3)
P 		97
B 89.2
(-1.2)
A 		93.9
(-0.9)
A 		65.7
(-3)
A 		145.7
(3)
P 		80
C 85.1
(-1.8)
A 		108.9
(-0.7)
A 		57.9
(-3)
A 		190.1
(3)
P 		132
avr 91.9
(-0.7) 		81.3
(-1.4) 		53.2
(-3) 		156.3
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 85.6
(3)
A 		84.1
(2.1)
A 		84.4
(2.3)
P 		84.1
(2.1)
A 		85
(2.6)
A 		75.6
(-3)
A 		10
B 86.6
(0.4)
A 		65.7
(-2.4)
A 		105.9
(3)
A 		96.2
(1.7)
A 		61.2
(-3)
A 		75.2
(-1.1)
P 		45
C 52.2
(-0.9)
A 		79.9
(1.1)
A 		21.9
(-3)
A 		68.1
(0.3)
A 		71.6
(0.5)
A 		106.6
(3)
P 		85
avr 74.8
(-1.4) 		76.6
(-0.7) 		70.7
(-3) 		82.8
(1.8) 		72.6
(-2.2) 		85.8
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 36.9
(3)
A 		9
(-3)
A 		9.4
(-2.9)
A 		19.5
(-0.7)
P 		28
B 28.4
(2)
A 		23.2
(0)
A 		15.2
(-3)
A 		31.1
(3)
P 		16
C 28.2
(1)
A 		31.3
(2.6)
A 		20.2
(-3)
A 		32.1
(3)
P 		12
avr 31.2
(3) 		21.2
(-0.7) 		14.9
(-3) 		27.6
(1.7) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 15.8
(-3)
A 		29.9
(3)
A 		18.4
(-1.9)
P 		21.3
(-0.7)
A 		25.7
(1.2)
A 		18.4
(-1.9)
A 		14
B 30.1
(3)
A 		21.9
(-3)
A 		25.7
(-0.2)
A 		25.5
(-0.4)
A 		24.9
(-0.8)
A 		28
(1.5)
P 		8
C 19.4
(-0.2)
A 		24.4
(0.7)
A 		5.6
(-3)
A 		13.7
(-1.4)
A 		23.2
(0.5)
A 		35.7
(3)
P 		30
avr 21.8
(-0.1) 		25.4
(1.9) 		16.6
(-3) 		20.2
(-1) 		24.6
(1.4) 		27.4
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179142_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12705
Sequence Type Exemplar sequence
Representative Public ID C15C8.6 NCBI
Target Description C15C8.6 /REP_DB=WormBase Gene ID /WP=CE05290 /TR=Q18021 /GB=CAA99778.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073788(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073788 NCBI Caenorhabditis elegans C15C8.6 (C15C8.6) mRNA, complete cds. 11/11 None
GENEFINDER00000030255 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12752620:12754114:-1 10/11 None
C15C8.6 ENSEMBL cdna:known chromosome:CEL140:V:12752620:12754913:-1 gene:C15C8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12752619-12754913(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15C8.6
Entrez Gene 182637 Entrez gene
SwissProt Q18021 EMBL-EBI
WormBase CE05290 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99778 Hypothetical protein C15C8.6 [Caenorhabditis elegans] ref|NP_506189.1| C15C8.6 [Caenorhabditis elegans] 1.0E-143
blast CAA99778 Hypothetical protein C15C8.6 [Caenorhabditis elegans] ref|NP_506189.1| C15C8.6 [Caenorhabditis elegans] 1.0E-127
blast CAE63987 Hypothetical protein CBG08579 [Caenorhabditis briggsae] 1.0E-110
blast CAE63987 Hypothetical protein CBG08579 [Caenorhabditis briggsae] 1.0E-91
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506189.1 6 38-60,83-105,112-134,167-189,218-240,250-272
C15C8.6 6 38-60,83-105,112-134,167-189,218-240,250-272
GENEFINDER00000030255 7 20-42,54-76,91-113,134-156,176-198,231-253,263-285
Sequence
Target Sequence 
>C. ELEGANS:179142_AT
tgaaccagccatactttgtcaacccagttatgataaatgttcctgcttttctacttattt
tatcacaatgttttgcttttgttttggtgataattattggattctaccgtagtctgagaa
ttgtttcgagcaaagctggaattcgtcgtttcaatccatcagaattaaattggaaattac
aatattttgaagtgatatcatttatctacctagtcgcttttatcattgttccaactacac
ttttttcacttattgcattatcttttttgatttacaaaaagcttttccaaaaaccacaca
cctcagaggacggagaagatgaagatgaaactgatgcacctcgggaaacaatttgctccc
tatttttctatatcatatttgatttattcttttgtttttggatctgtatgagcttcttat
catcagttccatttttatcattgtcacacgtgtttttgacagcttactggccattaatga
cttctctaacactggatgttcatattcgagcggcactattctaccgaattcgaaatgttt
tccaaccacaatcagccaacagtccaatcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACCAGCCATACTTTGTCAACCC 540 573 308 Antisense
GATAAATGTTCCTGCTTTTCTACTT 515 423 339 Antisense
GGAATTCGTCGTTTCAATCCATCAG 369 533 445 Antisense
CCTAGTCGCTTTTATCATTGTTCCA 524 267 516 Antisense
TTCCAACTACACTTTTTTCACTTAT 372 699 536 Antisense
AACAATTTGCTCCCTATTTTTCTAT 260 135 654 Antisense
GAGCTTCTTATCATCAGTTCCATTT 345 389 717 Antisense
GACAGCTTACTGGCCATTAATGACT 149 369 765 Antisense
GATGTTCATATTCGAGCGGCACTAT 594 409 802 Antisense
GCGGCACTATTCTACCGAATTCGAA 194 287 817 Antisense
CACAATCAGCCAACAGTCCAATCGT 517 193 854 Antisense
Sequence Source Affymetrix Proprietary Database