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[179141_at]

Description K04D7.5 /REP_DB=WormBase Gene ID /WP=CE06094 /TR=Q21216 /GB=CAA93515.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 66      6grp_highest_nonorm > 73      6grp_total > 76      4grp_total > 38      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 266
1 2 3 4 range
A 508.2
(3)
P 		323.2
(-2.4)
A 		303.1
(-3)
A 		304.4
(-3)
A 		205
B 489.2
(3)
P 		343.3
(-0.9)
A 		264.6
(-3)
A 		385.1
(0.2)
A 		225
C 530.7
(3)
P 		307.2
(-2.7)
A 		295.7
(-3)
A 		324.9
(-2.3)
A 		235
avr 509.4
(3) 		324.6
(-2) 		287.8
(-3) 		338.1
(-1.6) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 368
1 2 3 4 5 6 range
A 533.5
(-1.2)
P 		489.1
(-2.3)
P 		463.1
(-3)
P 		505.1
(-1.9)
P 		537.4
(-1.1)
P 		695.8
(3)
P 		233
B 474.6
(-2.2)
P 		432.2
(-3)
P 		434.7
(-3)
P 		741.2
(3)
P 		453.4
(-2.6)
P 		700.7
(2.2)
P 		309
C 466.2
(-2.3)
P 		448.6
(-2.6)
P 		564.8
(-0.7)
P 		567.1
(-0.7)
P 		423.2
(-3)
P 		791.2
(3)
P 		368
avr 491.4
(-2.2) 		456.6
(-3) 		487.5
(-2.3) 		604.5
(0.3) 		471.3
(-2.7) 		729.2
(3) 		273
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 185
(3)
P 		70.1
(-1.9)
A 		79.2
(-1.5)
A 		44.6
(-3)
A 		140
B 156
(3)
P 		84.8
(-1.5)
A 		61.3
(-3)
A 		82.1
(-1.7)
A 		95
C 175.7
(3)
P 		88.3
(-1.3)
A 		103.1
(-0.6)
A 		54.8
(-3)
A 		121
avr 172.2
(3) 		81.1
(-1.9) 		81.2
(-1.9) 		60.5
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 98.3
(-3)
P 		174
(3)
P 		100.9
(-2.8)
P 		128.1
(-0.6)
P 		162.2
(2.1)
P 		169.4
(2.6)
P 		76
B 165.1
(-0.7)
P 		143.9
(-1.5)
P 		105.5
(-3)
P 		196.3
(0.5)
P 		184.2
(0)
P 		261.3
(3)
P 		156
C 172.8
(-0.7)
P 		136.9
(-2.1)
P 		143.8
(-1.8)
P 		114.1
(-3)
P 		136.9
(-2.1)
P 		264.9
(3)
P 		151
avr 145.4
(-1.5) 		151.6
(-1.2) 		116.7
(-3) 		146.2
(-1.5) 		161.1
(-0.7) 		231.9
(3) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179141_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9644
Sequence Type Exemplar sequence
Representative Public ID K04D7.5 NCBI
Target Description K04D7.5 /REP_DB=WormBase Gene ID /WP=CE06094 /TR=Q21216 /GB=CAA93515.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069463(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069463 NCBI Caenorhabditis elegans abnormal GONad development family member (gon-4) (gon-4) mRNA, complete cds. 11/11 None
SNAP00000009544 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10197791:10202894:1 11/11 None
GENEFINDER00000009548 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10197791:10202894:1 11/11 None
K04D7.5 ENSEMBL cdna:known chromosome:CEL140:IV:10197791:10202916:1 gene:K04D7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10197796-10202900(+) 97.46 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gon-4
Ensembl K04D7.5
Entrez Gene 177899 Entrez gene
SwissProt Q21216 EMBL-EBI
WormBase CE35579 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3995 acyl-CoA dehydrogenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93515 Hypothetical protein K04D7.5 [Caenorhabditis elegans] ref|NP_501864.2| abnormal GONad development family member (gon-4) [Caenorhabditis elegans] 0.0
blast CAE59913 Hypothetical protein CBG03398 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179141_AT
gaccgacgagcaagcaaccaaacgattttatgaattatttggtcaagaccgcccattgtg
gaagaaattggagtcaagattctggtgtcttccgtacaaagctagaccacgccttgaaaa
ttacgaatacattgacttgactggactagagacaatgtcgaaacgagagaagcgtgactg
gaatagcattcctccgcgatttgagacggtggatgatatcgatcaagtaatgggaagtgt
ttatcgggcgtcaaagaatgaaccaccttcaaatttagttgtaaaatgtggagaattttg
cattcgaaatgacgacgaaacctatacccaattggaaattactgaacgactttggaccag
aaaagatgacatatctcttttgaccagctataatgaagctctcaaaaccatacccaactt
taccgtatctcaaatgccatccttgatatccgacctgtcattcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCGACGAGCAAGCAACCAAACGA 77 381 3498 Antisense
GTCAAGACCGCCCATTGTGGAAGAA 106 465 3539 Antisense
ATTCTGGTGTCTTCCGTACAAAGCT 466 9 3576 Antisense
GTACAAAGCTAGACCACGCCTTGAA 288 461 3591 Antisense
GCATTCCTCCGCGATTTGAGACGGT 455 307 3683 Antisense
ATGGGAAGTGTTTATCGGGCGTCAA 270 31 3727 Antisense
ATGACGACGAAACCTATACCCAATT 491 43 3806 Antisense
GATGACATATCTCTTTTGACCAGCT 613 411 3862 Antisense
TGAAGCTCTCAAAACCATACCCAAC 677 573 3891 Antisense
TTACCGTATCTCAAATGCCATCCTT 377 683 3917 Antisense
TCCTTGATATCCGACCTGTCATTCG 7 591 3937 Antisense
Sequence Source Affymetrix Proprietary Database