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[179139_at]

Description T05D4.4 /REP_DB=WormBase Gene ID /WP=CE16344 /TR=O45750 /GB=CAB03294.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 33      6grp_highest_nonorm > 61      6grp_total > 11      4grp_total > 58      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1098
1 2 3 4 range
A 542.8
(-1.2)
P 		1177.1
(2.7)
P 		1227.6
(3)
P 		244.2
(-3)
A 		983
B 581.4
(-0.8)
P 		1177
(3)
P 		1165.3
(2.9)
P 		232.7
(-3)
A 		944
C 526.2
(-1)
P 		1266.4
(3)
P 		1111.1
(2.2)
P 		168.8
(-3)
A 		1098
avr 550.1
(-1) 		1206.8
(3) 		1168
(2.8) 		215.2
(-3) 		992

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 500
1 2 3 4 5 6 range
A 466.9
(-0.5)
P 		697.4
(3)
P 		453.7
(-0.7)
P 		359.5
(-2.1)
P 		391
(-1.6)
P 		297.5
(-3)
P 		400
B 322.3
(-2.5)
P 		697.1
(3)
P 		422.6
(-1)
P 		420.5
(-1)
P 		371.2
(-1.7)
P 		285.2
(-3)
P 		412
C 299.5
(-1.9)
P 		708
(3)
P 		470.7
(0.2)
P 		348
(-1.3)
P 		331.4
(-1.5)
P 		208.4
(-3)
P 		500
avr 362.9
(-1.6) 		700.8
(3) 		449
(-0.5) 		376
(-1.5) 		364.5
(-1.6) 		263.7
(-3) 		437
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 359
1 2 3 4 range
A 197.6
(0.4)
P 		255.5
(1.6)
P 		320.9
(3)
P 		35.7
(-3)
A 		285
B 185.4
(0.4)
P 		290.7
(3)
P 		270
(2.5)
P 		49.6
(-3)
A 		241
C 174.2
(-0.6)
P 		364.1
(2.6)
P 		387.3
(3)
P 		28.5
(-3)
A 		359
avr 185.7
(0.1) 		303.4
(2.5) 		326.1
(3) 		37.9
(-3) 		288

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 86.1
(-2.5)
P 		248
(3)
P 		98.8
(-2.1)
P 		91.2
(-2.4)
P 		118
(-1.4)
P 		72.4
(-3)
P 		176
B 112.2
(-2.6)
P 		232
(3)
P 		102.6
(-3)
P 		111.4
(-2.6)
P 		150.8
(-0.8)
P 		106.3
(-2.8)
P 		129
C 111
(-1.3)
P 		216
(3)
P 		119.8
(-0.9)
P 		70
(-3)
P 		107.2
(-1.5)
P 		69.8
(-3)
P 		146
avr 103.1
(-2.2) 		232
(3) 		107.1
(-2) 		90.9
(-2.7) 		125.3
(-1.3) 		82.8
(-3) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179139_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7188
Sequence Type Exemplar sequence
Representative Public ID T05D4.4 NCBI
Target Description T05D4.4 /REP_DB=WormBase Gene ID /WP=CE16344 /TR=O45750 /GB=CAB03294.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067405(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067405 NCBI Caenorhabditis elegans T05D4.4 (T05D4.4) mRNA, complete cds. 11/11 None
SNAP00000043733 ENSEMBL cdna:SNAP chromosome:CEL140:III:13575720:13580055:1 11/11 None
GENEFINDER00000043738 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13575720:13580055:1 11/11 None
T05D4.4 ENSEMBL cdna:known chromosome:CEL140:III:13575704:13580117:1 gene:T05D4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13575715-13580051(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05D4.4
Entrez Gene 176790 Entrez gene
SwissProt O45750 EMBL-EBI
WormBase CE34087 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03294 Hypothetical protein T05D4.4 [Caenorhabditis elegans] ref|NP_499806.2| T05D4.4 [Caenorhabditis elegans] 0.0
blast CAE71337 Hypothetical protein CBG18238 [Caenorhabditis briggsae] 0.0
blast CAE56757 Hypothetical protein CBG24557 [Caenorhabditis briggsae] 6.0E-46
Sequence
Target Sequence 
>C. ELEGANS:179139_AT
tattgtgcattcggttgtcaccaccgagaaggatgcggagcataaagaagccaagaaaga
agcggaaccagagccaaactttgacaagattaagccgcgcacatttgccatgtcgtcggt
cgcggcgaccactgctatagttgacgaacagccggaagttccaaaaaaggcgtcaagtgg
gagagccaaagcccaccaaggaaacatcccaatccttccatcagacgccacgttcgccgc
acaaggcagtggagacgacaccttccgtgctttcgacggactctccgattccagaggact
cgtccacaccccgcggagcagatcgccattcaccaaacctggtctctgggagcccaatcc
agcagatccacattctagagatcccgcaaacaaatactggtatcatcccgagtccgtcgg
agtcgactggctcaatggtcagcttcaatggggaggtcattgggctgtacctgccgccgg
agcaggaggcactgctggaatgagtgcagtgcatttcccaactat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGTGCATTCGGTTGTCACCACC 364 665 1566 Antisense
AAGATTAAGCCGCGCACATTTGCCA 460 155 1651 Antisense
CGGCGACCACTGCTATAGTTGACGA 280 241 1688 Antisense
ACGTTCGCCGCACAAGGCAGTGGAG 349 93 1795 Antisense
ACTCTCCGATTCCAGAGGACTCGTC 517 97 1845 Antisense
TCACCAAACCTGGTCTCTGGGAGCC 637 625 1895 Antisense
CCAATCCAGCAGATCCACATTCTAG 273 277 1919 Antisense
CAAATACTGGTATCATCCCGAGTCC 200 193 1956 Antisense
GTCGACTGGCTCAATGGTCAGCTTC 222 475 1987 Antisense
TGTACCTGCCGCCGGAGCAGGAGGC 117 561 2031 Antisense
TGAGTGCAGTGCATTTCCCAACTAT 586 567 2066 Antisense
Sequence Source Affymetrix Proprietary Database