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[179137_at]

Description F14F8.8 /REP_DB=WormBase Gene ID /WP=CE18592 /TR=Q9XU39 /GB=CAB07183.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 5.3
(-3)
A 		52.8
(2.4)
A 		57.9
(3)
A 		53.4
(2.5)
A 		53
B 23.4
(-3)
A 		92.7
(3)
A 		31.8
(-2.3)
A 		55.6
(-0.2)
A 		69
C 21.9
(-3)
A 		55.8
(3)
P 		44.5
(1)
A 		45.8
(1.2)
A 		34
avr 16.9
(-3) 		67.1
(3) 		44.7
(0.3) 		51.6
(1.1) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 42.9
(1.4)
A 		55.1
(3)
A 		8.3
(-3)
A 		26.6
(-0.7)
A 		45.1
(1.7)
A 		38.2
(0.8)
A 		47
B 75.7
(3)
A 		36.3
(-0.3)
A 		67.1
(2.3)
A 		21.5
(-1.6)
A 		52.8
(1.1)
A 		4.9
(-3)
A 		71
C 46.6
(1.6)
A 		58.5
(3)
A 		7
(-3)
A 		25.9
(-0.8)
A 		37.4
(0.5)
A 		39.7
(0.8)
M 		52
avr 55.1
(3) 		50
(2) 		27.5
(-2.4) 		24.7
(-3) 		45.1
(1) 		27.6
(-2.4) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 1.9
(-3)
A 		11.5
(1.4)
A 		15.1
(3)
A 		7.8
(-0.3)
A 		13
B 7.5
(-3)
A 		22.9
(3)
A 		7.4
(-3)
A 		11.8
(-1.3)
A 		16
C 7.3
(-3)
A 		16
(3)
P 		15.5
(2.7)
A 		7.7
(-2.7)
A 		9
avr 5.6
(-3) 		16.8
(3) 		12.7
(0.8) 		9.1
(-1.1) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 7.9
(-0.9)
A 		19.6
(3)
A 		1.8
(-3)
A 		6.8
(-1.3)
A 		13.6
(1)
A 		9.3
(-0.5)
A 		18
B 26.3
(3)
A 		12.1
(-0.5)
A 		16.3
(0.6)
A 		5.7
(-2)
A 		21.5
(1.8)
A 		1.8
(-3)
A 		25
C 17.3
(2.8)
A 		17.9
(3)
A 		1.8
(-3)
A 		5.2
(-1.7)
A 		12.1
(0.8)
A 		13.3
(1.3)
M 		16
avr 17.2
(3) 		16.5
(2.6) 		6.6
(-2.6) 		5.9
(-3) 		15.7
(2.2) 		8.1
(-1.8) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179137_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14035
Sequence Type Exemplar sequence
Representative Public ID F14F8.8 NCBI
Target Description F14F8.8 /REP_DB=WormBase Gene ID /WP=CE18592 /TR=Q9XU39 /GB=CAB07183.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074818(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074818 NCBI Caenorhabditis elegans F14F8.8 (F14F8.8) mRNA, complete cds. 11/11 None
SNAP00000022523 ENSEMBL cdna:SNAP chromosome:CEL140:V:16674223:16674744:-1 11/11 None
GENEFINDER00000022532 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16674223:16674744:-1 11/11 None
F14F8.8 ENSEMBL cdna:known chromosome:CEL140:V:16674223:16674744:-1 gene:F14F8.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16674222-16674744(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14F8.8
Entrez Gene 184482 Entrez gene
SwissProt Q9XU39 EMBL-EBI
WormBase CE18592 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07183 Hypothetical protein F14F8.8 [Caenorhabditis elegans] ref|NP_507219.1| F14F8.8 [Caenorhabditis elegans] 1.0E-28
Sequence
Target Sequence 
>C. ELEGANS:179137_AT
ctctcttggcaactgctcaatcgggcccagctcaaactatgccgagctccactactatga
cccctgtcgctggaaactctggaaattcaggaatgcagggagcaaacactatgccaatga
atgctaccggaatgtcaaactcaaactcaatgggaccagcgagaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTCTTGGCAACTGCTCAATCGGG 450 229 38 Antisense
TCTTGGCAACTGCTCAATCGGGCCC 315 619 41 Antisense
GGCCCAGCTCAAACTATGCCGAGCT 127 543 61 Antisense
AGCTCAAACTATGCCGAGCTCCACT 609 79 66 Antisense
CCCTGTCGCTGGAAACTCTGGAAAT 574 257 99 Antisense
GAATGCAGGGAGCAAACACTATGCC 547 331 128 Antisense
ACACTATGCCAATGAATGCTACCGG 684 109 143 Antisense
GAATGCTACCGGAATGTCAAACTCA 207 329 156 Antisense
GCTACCGGAATGTCAAACTCAAACT 94 301 160 Antisense
AACTCAAACTCAATGGGACCAGCGA 504 137 175 Antisense
AAACTCAATGGGACCAGCGAGAACA 154 127 180 Antisense
Sequence Source Affymetrix Proprietary Database