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[179136_at]

Description C45G3.3 /REP_DB=WormBase Gene ID /WP=CE15713 /TR=O45303 /GB=CAA16283.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_highest_8_8 > 34      4grp_high_8_8 > 58      6grp_highest_nonorm > 73      6grp_total > 75      4grp_total > 61      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 402.5
(1.7)
P 		330.3
(-1.2)
P 		435.8
(3)
P 		286.8
(-3)
P 		149
B 381.8
(1.3)
P 		390.1
(3)
P 		376.7
(0.3)
P 		360.7
(-3)
P 		29
C 491.4
(3)
P 		385.6
(0.1)
P 		432.5
(1.4)
P 		272.4
(-3)
P 		219
avr 425.2
(3) 		368.7
(0.1) 		415
(2.5) 		306.6
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 442
1 2 3 4 5 6 range
A 331.2
(-3)
P 		390.5
(-2.1)
P 		598.5
(1)
P 		599.1
(1)
P 		520.9
(-0.1)
P 		728.6
(3)
P 		397
B 455.8
(-3)
P 		454.7
(-3)
P 		647.4
(2.3)
P 		557.5
(-0.2)
P 		601.5
(1)
P 		672.4
(3)
P 		218
C 435.5
(-3)
P 		455.7
(-2.6)
P 		457.4
(-2.6)
P 		621.9
(0.3)
P 		436
(-3)
P 		772.9
(3)
P 		337
avr 407.5
(-3) 		433.6
(-2.5) 		567.8
(0) 		592.8
(0.5) 		519.5
(-0.9) 		724.6
(3) 		317
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 146.6
(3)
P 		71.7
(-1.3)
P 		113.9
(1.1)
P 		42
(-3)
P 		105
B 121.8
(3)
P 		96.4
(-0.4)
P 		87.3
(-1.6)
P 		76.9
(-3)
P 		45
C 162.7
(3)
P 		110.9
(0.3)
P 		150.8
(2.4)
P 		45.9
(-3)
P 		117
avr 143.7
(3) 		93
(-0.4) 		117.3
(1.2) 		54.9
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 61.1
(-3)
P 		138.9
(1)
P 		130.3
(0.6)
P 		152
(1.7)
P 		157.2
(2)
P 		177.4
(3)
P 		116
B 158.6
(-2.4)
P 		151.3
(-2.8)
P 		157.2
(-2.4)
P 		147.7
(-3)
P 		244.4
(2.6)
P 		250.7
(3)
P 		103
C 161.4
(-1.1)
P 		139
(-2)
P 		116.4
(-3)
P 		125.1
(-2.6)
P 		141.1
(-2)
P 		258.7
(3)
P 		142
avr 127
(-3) 		143.1
(-2.1) 		134.6
(-2.6) 		141.6
(-2.1) 		180.9
(0.2) 		228.9
(3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179136_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1665
Sequence Type Exemplar sequence
Representative Public ID C45G3.3 NCBI
Target Description C45G3.3 /REP_DB=WormBase Gene ID /WP=CE15713 /TR=O45303 /GB=CAA16283.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025873(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025873 NCBI Caenorhabditis elegans C45G3.5 (C45G3.5) mRNA, complete cds. 11/11 None
SNAP00000043675 ENSEMBL cdna:SNAP chromosome:CEL140:I:9237663:9240140:1 11/11 None
GENEFINDER00000043679 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9237663:9240140:1 11/11 None
C45G3.5.1 ENSEMBL cdna:known chromosome:CEL140:I:9236282:9240203:1 gene:C45G3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9235045-9240071(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C45G3.5
Entrez Gene 3564968 Entrez gene
SwissProt Q5FC27 EMBL-EBI
WormBase CE37812 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI46549 Hypothetical protein C45G3.5 [Caenorhabditis elegans] emb|CAI46582.1| Hypothetical protein C45G3.5 [Caenorhabditis elegans] ref|NP_001021044.1| C45G3.5 [Caenorhabditis elegans] 0.0
blast CAE70378 Hypothetical protein CBG16939 [Caenorhabditis briggsae] 0.0
blast CAE70378 Hypothetical protein CBG16939 [Caenorhabditis briggsae] 1.0E-178
Sequence
Target Sequence 
>C. ELEGANS:179136_AT
gcttggacaacgaacgagtctcggaggaaatgctgataatctacgggataatgttactcc
aatgcttttcgaatgtatttctgtaaaaatggactgtccaatcgaaattgaacctatcat
ttcaatgaaagccgtcttcattctgactccagttttccgtatttggattcaacttcacgt
ggctagttacaccattgccaattatcgtgattcaattcgtggtcaaatgcccagtcgttc
tcttggagatattgctatgaaaaaacatttgatgcatgctttggatgctgaaatttcgag
tatcaagcagaaatgggttggatacgtggatttgcttatcaatttgtattatgagagaat
tcaaaaagcagcttctttggatgaatacaccgaatgtcaggatattcttgccagtgacgt
gactaatatgatgggaatttcggagctatcacaattggaaaatatcaaggatattctgaa
tattatctggaattacgataacgctgacagtaatctggctgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTGGACAACGAACGAGTCTCGGA 527 303 2169 Antisense
AATGTTACTCCAATGCTTTTCGAAT 677 163 2218 Antisense
ATTCTGACTCCAGTTTTCCGTATTT 522 9 2308 Antisense
TTTGGATTCAACTTCACGTGGCTAG 355 667 2330 Antisense
GCTAGTTACACCATTGCCAATTATC 206 295 2350 Antisense
AATTCGTGGTCAAATGCCCAGTCGT 194 177 2382 Antisense
TGCCCAGTCGTTCTCTTGGAGATAT 393 585 2396 Antisense
GGGTTGGATACGTGGATTTGCTTAT 411 491 2483 Antisense
GCAGCTTCTTTGGATGAATACACCG 9 315 2536 Antisense
GGATATTCTTGCCAGTGACGTGACT 73 511 2568 Antisense
AACGCTGACAGTAATCTGGCTGATT 536 145 2668 Antisense
Sequence Source Affymetrix Proprietary Database